Wall clock time and date at job start Mon Mar 30 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36895 * 126.39873 * 2 1 4 4 Br 1.89101 * 126.59779 * 359.97438 * 3 2 1 5 5 C 1.34767 * 106.80270 * 180.02562 * 3 2 1 6 6 N 1.34153 * 108.01847 * 359.77802 * 5 3 2 7 7 C 1.30483 * 109.26640 * 0.37115 * 6 5 3 8 8 C 1.50697 * 125.64516 * 179.89090 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.69500 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 H 1.09000 * 109.47077 * 269.99858 * 1 2 3 19 19 H 1.08996 * 109.47469 * 29.99982 * 1 2 3 20 20 H 1.08998 * 109.47103 * 150.00203 * 1 2 3 21 21 H 1.07997 * 125.98594 * 180.02562 * 5 3 2 22 22 H 1.09002 * 109.47120 * 149.69253 * 8 7 6 23 23 H 1.08998 * 109.46862 * 29.70055 * 8 7 6 24 24 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 26 26 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2774 1.1019 0.0000 4 35 1.7244 2.9102 -0.0007 5 6 3.5470 0.6499 -0.0006 6 7 3.5100 -0.6911 0.0040 7 6 2.2669 -1.0876 -0.0006 8 6 1.8024 -2.5212 0.0000 9 6 1.6439 -3.0066 -1.4423 10 6 1.1799 -4.4404 -1.4417 11 1 1.0142 -4.9540 -0.5062 12 6 0.9660 -5.0962 -2.6355 13 7 0.5606 -6.3473 -2.6349 14 14 1.2520 -4.2077 -4.2535 15 1 2.6597 -4.4039 -4.6839 16 1 0.3375 -4.7555 -5.2874 17 1 0.9862 -2.7576 -4.0757 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 4.4379 1.2603 -0.0003 22 1 0.8441 -2.5924 0.5147 23 1 2.5374 -3.1411 0.5134 24 1 2.6021 -2.9354 -1.9570 25 1 0.9088 -2.3866 -1.9555 26 1 0.4105 -6.8089 -3.4748 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213747849.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:29 Heat of formation + Delta-G solvation = 50.995346 kcal Electronic energy + Delta-G solvation = -11900.420985 eV Core-core repulsion = 9640.199575 eV Total energy + Delta-G solvation = -2260.221409 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.96284 -34.26220 -33.91175 -32.20491 -31.21626 -28.21961 -26.99498 -25.16559 -21.37597 -20.95898 -19.43593 -17.11977 -16.45658 -15.74709 -14.50725 -14.26309 -13.81871 -13.09159 -12.95103 -12.93572 -12.67774 -12.47911 -11.66797 -11.09746 -11.06144 -10.76935 -10.28944 -10.08890 -9.88405 -9.73007 -9.49927 -9.30845 -8.60373 -8.08628 -6.11313 -4.10878 1.28966 1.94806 2.97078 3.25681 3.28410 3.35680 3.39007 4.39888 4.77025 4.81632 5.16120 5.17144 5.22880 5.48139 5.56243 5.95241 6.23224 6.30138 6.52998 6.64264 7.12023 7.20805 7.27149 7.68195 8.20960 8.42988 8.91951 9.50418 11.01584 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.005489 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.399898 B = 5100.144881 C = 5230.006861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.447 5.447 3 C -0.061 4.061 4 Br 0.000 7.000 5 C 0.027 3.973 6 N -0.492 5.492 7 C 0.260 3.740 8 C -0.028 4.028 9 C -0.004 4.004 10 C -0.524 4.524 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.268 1.268 18 H 0.080 0.920 19 H 0.084 0.916 20 H 0.103 0.897 21 H 0.175 0.825 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.022 0.978 25 H 0.013 0.987 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 19.594 5.804 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.130 5.130 3 C -0.253 4.253 4 Br 0.083 6.917 5 C -0.126 4.126 6 N -0.210 5.210 7 C -0.004 4.004 8 C -0.067 4.067 9 C -0.043 4.043 10 C -0.562 4.562 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.193 1.193 18 H 0.098 0.902 19 H 0.103 0.897 20 H 0.121 0.879 21 H 0.192 0.808 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.045 19.598 5.698 20.410 hybrid contribution -0.528 0.663 -0.977 1.294 sum -0.483 20.261 4.721 20.810 Atomic orbital electron populations 1.22200 0.76165 1.05576 1.03974 1.45264 1.07825 1.05306 1.54593 1.22781 0.93196 0.86421 1.22860 1.96642 1.91654 1.05067 1.98363 1.22279 0.94406 0.91530 1.04406 1.70487 1.18831 1.10232 1.21415 1.24181 0.85124 0.91543 0.99546 1.20283 1.01165 0.83438 1.01833 1.19545 0.97038 0.97225 0.90461 1.21025 1.45585 0.94824 0.94747 0.90614 1.24969 0.94374 0.94656 0.99091 1.69901 1.46411 1.10416 1.27051 0.86805 0.78564 0.80397 0.83686 1.20031 1.21298 1.19265 0.90157 0.89709 0.87884 0.80801 0.90655 0.88747 0.96014 0.96889 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.62 59.85 0.64 1.41 15 2 N -0.45 -7.08 3.15 -119.33 -0.38 -7.46 15 3 C -0.06 -0.92 7.38 -16.52 -0.12 -1.04 15 4 Br 0.00 0.00 33.55 -68.01 -2.28 -2.28 15 5 C 0.03 0.43 11.84 -17.77 -0.21 0.22 15 6 N -0.49 -9.43 11.25 -10.77 -0.12 -9.55 15 7 C 0.26 4.80 7.16 -155.35 -1.11 3.68 15 8 C -0.03 -0.54 5.25 -27.89 -0.15 -0.69 15 9 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 15 10 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 15 11 H 0.08 2.20 7.99 -52.49 -0.42 1.78 15 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 15 13 N -0.90 -27.13 13.96 55.43 0.77 -26.36 15 14 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 15 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 15 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.08 0.90 7.79 -51.93 -0.40 0.49 15 20 H 0.10 1.30 7.66 -51.93 -0.40 0.90 15 21 H 0.17 2.27 8.06 -52.49 -0.42 1.85 15 22 H 0.07 1.32 7.71 -51.93 -0.40 0.92 15 23 H 0.09 1.85 8.14 -51.93 -0.42 1.43 15 24 H 0.02 0.53 7.57 -51.93 -0.39 0.14 15 25 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 15 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 250.10 15.07 3.77 3.77 Total: -1.00 -31.10 250.10 -7.23 -38.33 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -2.82 Total: -3.95 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.50 Total: -9.43 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.28 Total: -43.37 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.28 Total: -2.28 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.10 -7.23 -38.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213747849.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.321 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds