Wall clock time and date at job start Mon Mar 30 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36895 * 126.39873 * 2 1 4 4 Br 1.89101 * 126.59779 * 359.97438 * 3 2 1 5 5 C 1.34767 * 106.80270 * 180.02562 * 3 2 1 6 6 N 1.34153 * 108.01847 * 359.77802 * 5 3 2 7 7 C 1.30483 * 109.26640 * 0.37115 * 6 5 3 8 8 C 1.50697 * 125.64516 * 179.89090 * 7 6 5 9 9 C 1.52997 * 109.47466 * 269.69500 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 H 1.09000 * 109.47077 * 269.99858 * 1 2 3 19 19 H 1.08996 * 109.47469 * 29.99982 * 1 2 3 20 20 H 1.08998 * 109.47103 * 150.00203 * 1 2 3 21 21 H 1.07997 * 125.98594 * 180.02562 * 5 3 2 22 22 H 1.09002 * 109.47120 * 149.69253 * 8 7 6 23 23 H 1.08998 * 109.46862 * 29.70055 * 8 7 6 24 24 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 26 26 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2774 1.1019 0.0000 4 35 1.7244 2.9102 -0.0007 5 6 3.5470 0.6499 -0.0006 6 7 3.5100 -0.6911 0.0040 7 6 2.2669 -1.0876 -0.0006 8 6 1.8024 -2.5212 0.0000 9 6 1.6439 -3.0066 -1.4423 10 6 1.1799 -4.4404 -1.4417 11 1 1.0142 -4.9540 -0.5062 12 6 0.9660 -5.0962 -2.6355 13 7 0.5606 -6.3473 -2.6349 14 14 1.2520 -4.2077 -4.2535 15 1 2.6597 -4.4039 -4.6839 16 1 0.3375 -4.7555 -5.2874 17 1 0.9862 -2.7576 -4.0757 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 4.4379 1.2603 -0.0003 22 1 0.8441 -2.5924 0.5147 23 1 2.5374 -3.1411 0.5134 24 1 2.6021 -2.9354 -1.9570 25 1 0.9088 -2.3866 -1.9555 26 1 0.4105 -6.8089 -3.4748 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213747849.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:29 Heat of formation + Delta-G solvation = 31.965733 kcal Electronic energy + Delta-G solvation = -11901.246171 eV Core-core repulsion = 9640.199575 eV Total energy + Delta-G solvation = -2261.046595 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.21044 -36.05120 -35.14173 -33.98142 -32.56980 -29.74014 -28.10888 -26.82833 -23.13161 -22.27446 -20.80654 -19.02929 -17.85663 -17.00171 -16.26711 -15.78587 -15.19277 -14.77552 -14.53438 -14.25941 -14.01533 -13.64374 -13.33276 -12.94061 -12.42229 -11.96470 -11.88957 -11.79180 -11.76322 -11.42859 -10.99795 -10.78327 -10.69580 -9.32358 -8.30538 -6.34616 0.15997 0.71826 1.34399 1.36340 1.46269 1.84555 1.94581 2.33881 3.04948 3.45313 3.79757 3.91126 4.28107 4.38634 4.48469 4.56247 4.57607 4.85192 5.03598 5.29362 5.37367 5.52193 5.58506 5.97790 6.24339 6.72760 6.92812 7.30171 8.85550 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.005489 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.399898 B = 5100.144881 C = 5230.006861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.443 5.443 3 C -0.056 4.056 4 Br 0.039 6.961 5 C 0.009 3.991 6 N -0.522 5.522 7 C 0.235 3.765 8 C -0.016 4.016 9 C 0.005 3.995 10 C -0.528 4.528 11 H 0.046 0.954 12 C 0.014 3.986 13 N -0.945 5.945 14 Si 0.942 3.058 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.253 1.253 18 H 0.103 0.897 19 H 0.103 0.897 20 H 0.097 0.903 21 H 0.198 0.802 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.010 0.990 25 H 0.020 0.980 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 22.161 5.418 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.126 5.126 3 C -0.248 4.248 4 Br 0.121 6.879 5 C -0.144 4.144 6 N -0.241 5.241 7 C -0.029 4.029 8 C -0.055 4.055 9 C -0.034 4.034 10 C -0.566 4.566 11 H 0.064 0.936 12 C -0.184 4.184 13 N -0.585 5.585 14 Si 0.766 3.234 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.177 1.177 18 H 0.122 0.878 19 H 0.122 0.878 20 H 0.115 0.885 21 H 0.215 0.785 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.300 22.179 5.325 22.812 hybrid contribution -0.447 -0.050 -0.767 0.889 sum -0.748 22.129 4.558 22.606 Atomic orbital electron populations 1.22491 0.74153 1.06244 1.05773 1.45432 1.09070 1.04802 1.53300 1.23176 0.93020 0.87965 1.20677 1.96688 1.91289 1.01666 1.98219 1.22732 0.95988 0.90715 1.04917 1.70388 1.19645 1.12185 1.21898 1.23709 0.85621 0.91517 1.02067 1.19965 1.01853 0.84471 0.99235 1.19378 0.96100 0.94748 0.93174 1.21340 1.44820 0.96835 0.93633 0.93593 1.25836 0.94290 0.95348 1.02946 1.70034 1.48119 1.12174 1.28169 0.85781 0.78481 0.79873 0.79221 1.19817 1.20543 1.17706 0.87842 0.87808 0.88468 0.78493 0.89061 0.89773 0.97209 0.96152 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.17 10.62 127.77 1.36 2.53 15 2 N -0.44 -13.09 3.15 -531.44 -1.68 -14.76 15 3 C -0.06 -1.55 7.38 83.11 0.61 -0.93 15 4 Br 0.04 0.78 33.55 -20.37 -0.68 0.10 15 5 C 0.01 0.26 11.84 83.54 0.99 1.25 15 6 N -0.52 -19.58 11.25 -188.00 -2.12 -21.69 15 7 C 0.23 8.42 7.16 138.10 0.99 9.41 15 8 C -0.02 -0.62 5.25 29.85 0.16 -0.46 15 9 C 0.00 0.21 4.02 29.85 0.12 0.33 15 10 C -0.53 -29.45 9.66 25.60 0.25 -29.20 15 11 H 0.05 2.76 7.99 -2.91 -0.02 2.74 15 12 C 0.01 0.78 5.47 84.66 0.46 1.24 15 13 N -0.94 -57.99 13.96 21.45 0.30 -57.69 15 14 Si 0.94 44.24 27.47 68.60 1.88 46.12 15 15 H -0.27 -12.65 7.11 99.48 0.71 -11.95 15 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 17 H -0.25 -11.18 6.54 99.48 0.65 -10.53 15 18 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.10 1.84 7.79 -2.39 -0.02 1.82 15 20 H 0.10 2.24 7.66 -2.39 -0.02 2.22 15 21 H 0.20 4.73 8.06 -2.91 -0.02 4.70 15 22 H 0.09 3.14 7.71 -2.39 -0.02 3.12 15 23 H 0.08 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.01 0.47 7.57 -2.39 -0.02 0.45 15 25 H 0.02 0.91 7.20 -2.39 -0.02 0.89 15 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 Total: -1.00 -66.45 250.10 3.76 -62.69 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 1.12 Total: 1.08 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.94 Total: -15.83 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -3.49 Total: -94.15 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 35 Polarization: 0.78 SS G_CDS: -0.68 Total: 0.10 kcal Total: -66.45 3.76 -62.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213747849.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.652 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds