Wall clock time and date at job start Mon Mar 30 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35747 * 117.00107 * 2 1 4 4 C 1.38940 * 119.78432 * 0.02562 * 3 2 1 5 5 C 1.38085 * 120.19800 * 179.97438 * 4 3 2 6 6 O 1.35706 * 120.11866 * 180.02562 * 5 4 3 7 7 C 1.41454 * 119.76648 * 0.28045 * 5 4 3 8 8 C 1.40971 * 120.21133 * 179.72490 * 7 5 4 9 9 H 1.08003 * 120.00064 * 141.18183 * 8 7 5 10 10 C 1.39842 * 119.99534 * 321.18247 * 8 7 5 11 11 N 1.30949 * 120.00343 * 339.29502 * 10 8 7 12 12 Si 1.86802 * 119.99579 * 159.29314 * 10 8 7 13 13 H 1.48502 * 109.47376 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47195 * 120.00104 * 12 10 8 15 15 H 1.48504 * 109.46908 * 239.99842 * 12 10 8 16 16 C 1.40900 * 119.58119 * 359.47197 * 7 5 4 17 17 Cl 1.73600 * 120.10192 * 180.25173 * 16 7 5 18 18 C 1.37786 * 119.79456 * 0.52390 * 16 7 5 19 19 O 1.36049 * 119.88288 * 179.69993 * 18 16 7 20 20 C 1.42900 * 117.00305 * 270.02507 * 19 18 16 21 21 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46962 * 299.99494 * 1 2 3 23 23 H 1.08994 * 109.47436 * 59.99649 * 1 2 3 24 24 H 1.07999 * 119.89692 * 0.02562 * 4 3 2 25 25 H 0.96705 * 114.00587 * 84.64217 * 6 5 4 26 26 H 0.96996 * 120.00251 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.46902 * 59.99953 * 20 19 18 28 28 H 1.08999 * 109.47057 * 180.02562 * 20 19 18 29 29 H 1.08998 * 109.46864 * 300.00090 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2843 2.3719 0.0005 5 6 1.9023 3.6067 0.0011 6 8 1.1573 4.7411 0.0021 7 6 3.3146 3.6852 -0.0049 8 6 3.9553 4.9409 -0.0103 9 1 4.8523 5.0920 0.5720 10 6 3.4293 5.9909 -0.7696 11 7 2.6187 5.7364 -1.7660 12 14 3.8832 7.7565 -0.3623 13 1 4.8074 7.7747 0.8000 14 1 4.5489 8.3795 -1.5344 15 1 2.6535 8.5192 -0.0283 16 6 4.0771 2.5003 -0.0001 17 17 5.8112 2.5809 -0.0008 18 6 3.4421 1.2775 -0.0006 19 8 4.1766 0.1323 -0.0021 20 6 4.5262 -0.4125 -1.2760 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2061 2.3094 0.0014 25 1 0.8728 5.0241 0.8820 26 1 2.2542 6.4646 -2.2928 27 1 5.1170 0.3151 -1.8326 28 1 5.1093 -1.3225 -1.1344 29 1 3.6187 -0.6459 -1.8328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216492725.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:59 Heat of formation + Delta-G solvation = -117.570980 kcal Electronic energy + Delta-G solvation = -17556.798693 eV Core-core repulsion = 14471.402634 eV Total energy + Delta-G solvation = -3085.396059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04816 -38.97624 -38.86138 -37.09955 -35.80486 -34.98314 -31.27935 -30.20880 -28.39024 -27.53140 -26.18695 -22.95059 -22.73526 -19.74182 -19.19449 -18.13139 -17.80924 -16.97783 -16.70776 -16.54702 -15.89287 -15.58670 -15.25514 -15.06036 -14.77247 -14.22855 -13.60753 -13.43005 -13.03217 -12.85100 -12.72151 -12.58707 -12.38170 -12.06275 -12.01811 -11.49913 -11.20473 -11.03094 -10.78564 -10.60451 -9.23546 -8.82045 -8.55932 -6.24177 0.44232 0.76309 1.44413 1.47097 1.57745 1.61572 2.27728 2.54492 2.78671 2.98671 3.40063 3.84752 4.27541 4.42513 4.46340 4.49821 4.58048 4.68545 4.74121 4.76210 5.01018 5.09565 5.27689 5.38059 5.70125 5.81920 6.35842 6.44473 6.67299 6.89742 6.94308 7.40769 8.43802 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.009241 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.824572 B = 3029.247663 C = 4035.629015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.330 6.330 3 C 0.013 3.987 4 C -0.191 4.191 5 C 0.074 3.926 6 O -0.473 6.473 7 C 0.065 3.935 8 C -0.486 4.486 9 H 0.077 0.923 10 C 0.061 3.939 11 N -0.791 5.791 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.263 1.263 16 C -0.125 4.125 17 Cl -0.079 7.079 18 C 0.079 3.921 19 O -0.339 6.339 20 C 0.038 3.962 21 H 0.120 0.880 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.140 0.860 25 H 0.373 0.627 26 H 0.285 0.715 27 H 0.034 0.966 28 H 0.116 0.884 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -4.615 1.793 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.245 6.245 3 C -0.033 4.033 4 C -0.210 4.210 5 C 0.028 3.972 6 O -0.280 6.280 7 C 0.061 3.939 8 C -0.514 4.514 9 H 0.095 0.905 10 C -0.158 4.158 11 N -0.415 5.415 12 Si 0.790 3.210 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.188 1.188 16 C -0.154 4.154 17 Cl -0.051 7.051 18 C 0.034 3.966 19 O -0.256 6.256 20 C -0.056 4.056 21 H 0.139 0.861 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.157 0.843 25 H 0.227 0.773 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.135 0.865 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.884 -4.832 1.124 5.738 hybrid contribution -0.030 1.052 0.219 1.075 sum -2.914 -3.780 1.344 4.958 Atomic orbital electron populations 1.23167 0.77745 1.04791 1.01235 1.85918 1.22190 1.25888 1.90514 1.18452 0.90097 0.84707 1.10010 1.21232 0.99943 0.91282 1.08571 1.18179 0.88784 0.84879 1.05387 1.84903 1.70048 1.41188 1.31909 1.17841 0.91457 0.92253 0.92343 1.19276 1.11051 0.94790 1.26322 0.90519 1.26333 0.92811 1.04156 0.92547 1.69814 1.23280 1.36117 1.12250 0.85370 0.79078 0.77405 0.79100 1.18569 1.19955 1.18785 1.20946 0.83706 0.93080 1.17639 1.98200 1.10811 1.98699 1.97374 1.17486 0.86912 0.84829 1.07382 1.85960 1.71134 1.38277 1.30231 1.23018 0.99558 0.98748 0.84286 0.86137 0.92613 0.93241 0.84267 0.77269 0.90455 0.94688 0.86542 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.80 113.37 1.11 1.79 15 2 O -0.33 -12.67 10.26 -76.66 -0.79 -13.45 15 3 C 0.01 0.56 6.72 22.83 0.15 0.71 15 4 C -0.19 -8.21 8.94 22.40 0.20 -8.01 15 5 C 0.07 3.55 6.18 23.03 0.14 3.69 15 6 O -0.47 -21.18 10.40 -90.27 -0.94 -22.12 15 7 C 0.06 3.34 5.37 -21.17 -0.11 3.23 15 8 C -0.49 -25.16 8.10 23.33 0.19 -24.97 15 9 H 0.08 3.98 7.55 -2.91 -0.02 3.96 15 10 C 0.06 2.97 4.38 85.21 0.37 3.34 15 11 N -0.79 -40.72 11.28 21.81 0.25 -40.47 15 12 Si 0.97 37.77 29.61 68.60 2.03 39.80 15 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 14 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15 15 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 16 C -0.13 -6.21 6.37 22.81 0.15 -6.06 15 17 Cl -0.08 -3.59 27.33 -2.72 -0.07 -3.67 15 18 C 0.08 3.69 5.72 22.55 0.13 3.82 15 19 O -0.34 -14.58 9.62 -80.04 -0.77 -15.35 15 20 C 0.04 1.31 11.13 113.37 1.26 2.57 15 21 H 0.12 2.41 8.14 -2.38 -0.02 2.39 15 22 H 0.06 1.40 7.64 -2.39 -0.02 1.38 15 23 H 0.05 1.30 7.65 -2.39 -0.02 1.28 15 24 H 0.14 5.10 6.25 -2.91 -0.02 5.09 15 25 H 0.37 13.15 9.06 -74.05 -0.67 12.48 15 26 H 0.29 13.49 8.30 -92.71 -0.77 12.72 15 27 H 0.03 1.23 8.14 -2.38 -0.02 1.22 15 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 15 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 Total: -1.00 -62.30 271.55 3.83 -58.48 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.53 Total: 16.67 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.59 Total: -19.88 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.25 Total: -40.47 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -2.49 Total: -50.92 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.07 Total: -3.67 kcal Total: -62.30 3.83 -58.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216492725.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.093 kcal (2) G-P(sol) polarization free energy of solvation -62.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds