Wall clock time and date at job start Mon Mar 30 2020 07:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35764 * 117.00292 * 2 1 4 4 C 1.39327 * 119.78521 * 0.02562 * 3 2 1 5 5 C 1.36475 * 120.47831 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.98853 * 179.97438 * 5 4 3 7 7 C 1.41001 * 120.02429 * 359.97438 * 5 4 3 8 8 C 1.41006 * 120.21234 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99951 * 319.00763 * 8 7 5 10 10 C 1.39855 * 119.99724 * 138.99767 * 8 7 5 11 11 N 1.30949 * 119.99616 * 157.98042 * 10 8 7 12 12 Si 1.86796 * 120.00118 * 337.98542 * 10 8 7 13 13 H 1.48500 * 109.47373 * 94.93174 * 12 10 8 14 14 H 1.48506 * 109.47007 * 214.92923 * 12 10 8 15 15 H 1.48502 * 109.47136 * 334.92955 * 12 10 8 16 16 C 1.41305 * 119.57609 * 0.02562 * 7 5 4 17 17 O 1.35789 * 120.23683 * 179.97438 * 16 7 5 18 18 C 1.38444 * 119.52609 * 359.97438 * 16 7 5 19 19 O 1.36117 * 120.01624 * 179.97438 * 18 16 7 20 20 C 1.42908 * 117.00067 * 270.02372 * 19 18 16 21 21 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47136 * 300.00137 * 1 2 3 23 23 H 1.09005 * 109.47300 * 59.99906 * 1 2 3 24 24 H 1.08002 * 119.76414 * 359.72083 * 4 3 2 25 25 H 0.96995 * 119.99827 * 180.02562 * 11 10 8 26 26 H 0.96702 * 114.00188 * 269.98227 * 17 16 7 27 27 H 1.08995 * 109.46782 * 300.00036 * 20 19 18 28 28 H 1.08995 * 109.46803 * 59.99762 * 20 19 18 29 29 H 1.09003 * 109.46834 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2823 2.3753 0.0005 5 6 1.8871 3.5987 0.0011 6 17 0.9239 5.0429 0.0011 7 6 3.2942 3.6900 0.0016 8 6 3.9233 4.9520 0.0027 9 1 3.5326 5.7506 -0.6104 10 6 5.0531 5.1693 0.7979 11 7 5.8830 6.1390 0.5051 12 14 5.3781 4.0765 2.2776 13 1 6.2985 2.9779 1.8889 14 1 5.9978 4.8814 3.3609 15 1 4.0965 3.5014 2.7593 16 6 4.0698 2.5089 0.0011 17 8 5.4258 2.5812 0.0011 18 6 3.4373 1.2773 0.0005 19 8 4.1747 0.1332 -0.0005 20 6 4.5261 -0.4110 -1.2743 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2042 2.3104 -0.0036 25 1 6.6668 6.2895 1.0564 26 1 5.8185 2.6023 -0.8823 27 1 3.6193 -0.6465 -1.8314 28 1 5.1154 0.3178 -1.8307 29 1 5.1111 -1.3197 -1.1323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216492859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:08 Heat of formation + Delta-G solvation = -119.122889 kcal Electronic energy + Delta-G solvation = -17715.656520 eV Core-core repulsion = 14630.193165 eV Total energy + Delta-G solvation = -3085.463355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35169 -39.34940 -38.50608 -37.45243 -36.14955 -35.16463 -31.64746 -30.58025 -28.35754 -27.48869 -26.38320 -23.16252 -22.62361 -19.92042 -19.45779 -18.14880 -18.03037 -17.60571 -16.73678 -16.71223 -15.97538 -15.75514 -15.46867 -15.09303 -14.79694 -14.60934 -13.90636 -13.66622 -13.09497 -12.99086 -12.76655 -12.51863 -12.41455 -12.15348 -12.00201 -11.54257 -11.49029 -11.15599 -10.88433 -10.60212 -9.40308 -9.01638 -8.82943 -6.42772 0.23114 0.50678 1.34029 1.51269 1.52445 1.54507 2.28623 2.37261 2.53798 2.83825 3.20266 3.68999 4.19687 4.36877 4.45713 4.46551 4.54045 4.55872 4.71688 4.75030 4.78445 4.96185 5.09473 5.27672 5.53046 5.65265 6.20138 6.27199 6.49736 6.71431 6.80669 7.11565 8.20660 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.011471 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.018600 B = 2440.318997 C = 3510.781324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.021 3.979 4 C -0.147 4.147 5 C -0.087 4.087 6 Cl -0.079 7.079 7 C 0.040 3.960 8 C -0.465 4.465 9 H 0.073 0.927 10 C 0.086 3.914 11 N -0.836 5.836 12 Si 0.954 3.046 13 H -0.237 1.237 14 H -0.288 1.288 15 H -0.284 1.284 16 C 0.007 3.993 17 O -0.471 6.471 18 C 0.071 3.929 19 O -0.344 6.344 20 C 0.035 3.965 21 H 0.121 0.879 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.152 0.848 25 H 0.291 0.709 26 H 0.374 0.626 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -9.855 -2.538 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C -0.024 4.024 4 C -0.167 4.167 5 C -0.115 4.115 6 Cl -0.050 7.050 7 C 0.037 3.963 8 C -0.493 4.493 9 H 0.091 0.909 10 C -0.131 4.131 11 N -0.462 5.462 12 Si 0.781 3.219 13 H -0.162 1.162 14 H -0.215 1.215 15 H -0.209 1.209 16 C -0.040 4.040 17 O -0.282 6.282 18 C 0.026 3.974 19 O -0.261 6.261 20 C -0.059 4.059 21 H 0.139 0.861 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.169 0.831 25 H 0.102 0.898 26 H 0.231 0.769 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.913 -9.829 -1.782 11.608 hybrid contribution 0.011 0.450 -0.219 0.500 sum -5.903 -9.379 -2.000 11.261 Atomic orbital electron populations 1.23263 0.77365 1.05156 1.01681 1.85971 1.22538 1.25363 1.90213 1.18590 0.90323 0.84775 1.08737 1.20601 1.00473 0.89600 1.06004 1.20504 0.90943 0.86797 1.13264 1.98247 1.70314 1.39251 1.97236 1.17830 0.90398 0.93433 0.94678 1.18951 1.09260 0.96565 1.24560 0.90913 1.26334 0.92514 0.94677 0.99547 1.69780 1.10076 1.29533 1.36844 0.85572 0.79685 0.79442 0.77223 1.16199 1.21546 1.20913 1.18374 0.84044 0.89915 1.11652 1.85110 1.15299 1.95321 1.32453 1.18236 0.87256 0.85648 1.06288 1.86028 1.71071 1.38187 1.30787 1.23074 0.99919 0.99001 0.83872 0.86061 0.92686 0.92186 0.83061 0.89834 0.76914 0.93531 0.93598 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.80 113.37 1.11 1.57 15 2 O -0.33 -11.22 10.25 -76.75 -0.79 -12.01 15 3 C 0.02 0.85 6.72 22.80 0.15 1.01 15 4 C -0.15 -5.68 8.72 22.12 0.19 -5.49 15 5 C -0.09 -3.85 6.33 22.54 0.14 -3.71 15 6 Cl -0.08 -3.21 27.84 -2.72 -0.08 -3.29 15 7 C 0.04 1.98 4.74 -21.17 -0.10 1.88 15 8 C -0.46 -24.77 8.56 23.34 0.20 -24.57 15 9 H 0.07 4.16 7.76 -2.91 -0.02 4.13 15 10 C 0.09 4.55 4.84 85.22 0.41 4.97 15 11 N -0.84 -44.70 13.93 21.82 0.30 -44.39 15 12 Si 0.95 45.92 24.70 68.60 1.69 47.61 15 13 H -0.24 -11.26 6.05 99.48 0.60 -10.66 15 14 H -0.29 -13.15 7.11 99.48 0.71 -12.45 15 15 H -0.28 -14.55 7.11 99.48 0.71 -13.84 15 16 C 0.01 0.31 5.24 23.07 0.12 0.43 15 17 O -0.47 -20.94 8.18 -77.05 -0.63 -21.57 15 18 C 0.07 3.05 5.74 22.59 0.13 3.18 15 19 O -0.34 -13.79 9.97 -70.55 -0.70 -14.49 15 20 C 0.04 1.03 11.14 113.37 1.26 2.29 15 21 H 0.12 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.05 1.22 7.65 -2.39 -0.02 1.20 15 23 H 0.06 1.25 7.64 -2.38 -0.02 1.24 15 24 H 0.15 4.77 6.25 -2.91 -0.02 4.75 15 25 H 0.29 14.27 8.30 -92.71 -0.77 13.50 15 26 H 0.37 13.75 9.06 -74.06 -0.67 13.08 15 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -62.38 266.18 3.85 -58.53 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.42 Total: 8.04 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.62 Total: -18.44 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.30 Total: -44.39 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.12 Total: -48.07 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.69 Total: 47.61 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -62.38 3.85 -58.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216492859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.591 kcal (2) G-P(sol) polarization free energy of solvation -62.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds