Wall clock time and date at job start Mon Mar 30 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35710 * 117.00153 * 2 1 4 4 C 1.39161 * 119.73901 * 359.97377 * 3 2 1 5 5 C 1.37970 * 120.27084 * 179.73936 * 4 3 2 6 6 O 1.35715 * 120.12664 * 180.28007 * 5 4 3 7 7 C 1.41401 * 119.74101 * 0.58451 * 5 4 3 8 8 C 1.40898 * 120.25351 * 179.69824 * 7 5 4 9 9 H 1.07998 * 119.99834 * 38.89070 * 8 7 5 10 10 C 1.39833 * 119.99481 * 218.61981 * 8 7 5 11 11 N 1.30982 * 120.00417 * 20.44082 * 10 8 7 12 12 Si 1.86806 * 119.99662 * 200.44049 * 10 8 7 13 13 H 1.48499 * 109.47338 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47193 * 120.00292 * 12 10 8 15 15 H 1.48504 * 109.46828 * 239.99828 * 12 10 8 16 16 C 1.41337 * 119.49110 * 359.41690 * 7 5 4 17 17 O 1.35724 * 120.14016 * 180.29840 * 16 7 5 18 18 C 1.42897 * 117.00022 * 90.00715 * 17 16 7 19 19 C 1.38067 * 119.71751 * 0.28184 * 16 7 5 20 20 Cl 1.73604 * 119.87159 * 179.97438 * 19 16 7 21 21 H 1.08999 * 109.47290 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47752 * 300.00439 * 1 2 3 23 23 H 1.09006 * 109.47045 * 60.00409 * 1 2 3 24 24 H 1.08004 * 119.86292 * 0.02562 * 4 3 2 25 25 H 0.96704 * 114.00058 * 275.16104 * 6 5 4 26 26 H 0.96997 * 119.99967 * 179.97438 * 11 10 8 27 27 H 1.09001 * 109.47692 * 59.99315 * 18 17 16 28 28 H 1.09003 * 109.47709 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.47058 * 299.99873 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2819 2.3728 -0.0006 5 6 1.8969 3.6079 0.0049 6 8 1.1497 4.7408 0.0100 7 6 3.3085 3.6886 -0.0015 8 6 3.9478 4.9443 -0.0025 9 1 3.5467 5.7548 0.5878 10 6 5.1046 5.1392 -0.7634 11 7 5.3756 4.3350 -1.7612 12 14 6.2638 6.5466 -0.3569 13 1 5.7347 7.3035 0.8059 14 1 7.6053 6.0030 -0.0255 15 1 6.3724 7.4524 -1.5287 16 6 4.0735 2.5001 -0.0009 17 8 5.4293 2.5623 -0.0009 18 6 6.0773 2.5925 1.2724 19 6 3.4356 1.2757 0.0000 20 17 4.3712 -0.1867 0.0002 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2038 2.3088 -0.0006 25 1 0.8667 5.0294 -0.8685 26 1 6.1779 4.4704 -2.2892 27 1 5.8254 1.6903 1.8298 28 1 7.1568 2.6424 1.1297 29 1 5.7439 3.4684 1.8290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216493527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:53 Heat of formation + Delta-G solvation = -96.296914 kcal Electronic energy + Delta-G solvation = -17696.607933 eV Core-core repulsion = 14612.134387 eV Total energy + Delta-G solvation = -3084.473546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23753 -37.73520 -36.80379 -35.42269 -34.00233 -33.25022 -29.37751 -28.59372 -27.07477 -25.70430 -24.53449 -21.10287 -20.99095 -18.02570 -17.43517 -16.22362 -15.85450 -15.31037 -15.19126 -14.96022 -14.41768 -14.12800 -13.78103 -13.32276 -12.85695 -12.32634 -12.19290 -11.93653 -11.51409 -11.27744 -10.91061 -10.86968 -10.67704 -10.51996 -10.30890 -9.98466 -9.62513 -9.49096 -8.94037 -8.63956 -7.40614 -7.10967 -6.75318 -4.36004 2.21391 2.53257 3.05884 3.09968 3.14389 3.23901 3.95285 4.04803 4.32840 4.99484 5.14592 5.48830 5.60216 5.65646 5.79281 5.97710 6.16081 6.24442 6.38223 6.44220 6.74170 6.78649 7.09171 7.20346 7.38228 7.63634 8.16578 8.22464 8.48568 8.75115 8.81073 9.02853 10.21021 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.009492 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.331918 B = 2949.203639 C = 3860.130202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.026 3.974 4 C -0.187 4.187 5 C 0.032 3.968 6 O -0.490 6.490 7 C 0.075 3.925 8 C -0.457 4.457 9 H 0.086 0.914 10 C 0.089 3.911 11 N -0.752 5.752 12 Si 0.896 3.104 13 H -0.261 1.261 14 H -0.271 1.271 15 H -0.275 1.275 16 C 0.077 3.923 17 O -0.286 6.286 18 C 0.036 3.964 19 C -0.046 4.046 20 Cl -0.092 7.092 21 H 0.086 0.914 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.114 0.886 25 H 0.365 0.635 26 H 0.282 0.718 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -2.808 1.871 4.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.232 6.232 3 C -0.019 4.019 4 C -0.207 4.207 5 C -0.014 4.014 6 O -0.297 6.297 7 C 0.071 3.929 8 C -0.485 4.485 9 H 0.104 0.896 10 C -0.133 4.133 11 N -0.374 5.374 12 Si 0.721 3.279 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.201 1.201 16 C 0.031 3.969 17 O -0.201 6.201 18 C -0.060 4.060 19 C -0.074 4.074 20 Cl -0.064 7.064 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.132 0.868 25 H 0.218 0.782 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.406 -3.197 2.130 4.534 hybrid contribution 0.220 0.654 -0.271 0.742 sum -2.187 -2.543 1.859 3.835 Atomic orbital electron populations 1.22788 0.80394 1.02237 1.00531 1.85946 1.19477 1.26948 1.90807 1.17642 0.89378 0.83796 1.11045 1.20912 0.98393 0.91802 1.09569 1.18060 0.89438 0.84004 1.09914 1.84728 1.70792 1.41960 1.32249 1.17904 0.89820 0.93136 0.92071 1.19122 1.07761 0.96785 1.24819 0.89623 1.25722 0.97192 0.96919 0.93480 1.69768 1.23273 1.33184 1.11200 0.86451 0.80543 0.81286 0.79656 1.18444 1.19568 1.20085 1.17873 0.83477 0.88626 1.06925 1.86140 1.14977 1.93458 1.25558 1.22742 0.96690 0.99485 0.87040 1.20402 0.88390 0.86347 1.12248 1.98255 1.73552 1.37238 1.97349 0.89550 0.93657 0.93651 0.86782 0.78167 0.90690 0.95172 0.90895 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.80 101.05 0.99 1.53 15 2 O -0.32 -6.34 9.92 -18.83 -0.19 -6.53 15 3 C 0.03 0.59 6.70 -38.88 -0.26 0.33 15 4 C -0.19 -4.05 8.94 -39.34 -0.35 -4.40 15 5 C 0.03 0.75 6.73 -38.48 -0.26 0.49 15 6 O -0.49 -10.48 12.94 -18.85 -0.24 -10.72 15 7 C 0.07 1.91 5.38 -106.51 -0.57 1.34 15 8 C -0.46 -11.68 8.40 -37.98 -0.32 -12.00 15 9 H 0.09 2.19 7.91 -52.49 -0.42 1.78 15 10 C 0.09 2.18 4.39 -17.32 -0.08 2.11 15 11 N -0.75 -19.20 11.27 55.54 0.63 -18.58 15 12 Si 0.90 18.41 29.61 -169.99 -5.03 13.38 15 13 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 15 H -0.28 -5.57 7.11 56.52 0.40 -5.16 15 16 C 0.08 1.95 5.19 -38.47 -0.20 1.75 15 17 O -0.29 -7.00 6.75 -18.88 -0.13 -7.13 15 18 C 0.04 0.73 11.13 101.05 1.12 1.85 15 19 C -0.05 -1.10 6.34 -39.29 -0.25 -1.35 15 20 Cl -0.09 -1.99 28.00 -51.86 -1.45 -3.44 15 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.04 0.63 7.64 -51.93 -0.40 0.23 15 23 H 0.04 0.63 7.64 -51.93 -0.40 0.23 15 24 H 0.11 2.13 6.25 -52.48 -0.33 1.80 15 25 H 0.37 6.27 9.06 45.56 0.41 6.68 15 26 H 0.28 6.66 8.30 -40.82 -0.34 6.32 15 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 15 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -28.91 272.15 -4.44 -33.35 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -1.95 Total: 3.93 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.17 Total: -8.36 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.63 Total: -18.58 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.56 Total: -24.38 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.45 Total: -3.44 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.91 -4.44 -33.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216493527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.951 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds