Wall clock time and date at job start Mon Mar 30 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35710 * 117.00153 * 2 1 4 4 C 1.39161 * 119.73901 * 359.97377 * 3 2 1 5 5 C 1.37970 * 120.27084 * 179.73936 * 4 3 2 6 6 O 1.35715 * 120.12664 * 180.28007 * 5 4 3 7 7 C 1.41401 * 119.74101 * 0.58451 * 5 4 3 8 8 C 1.40898 * 120.25351 * 179.69824 * 7 5 4 9 9 H 1.07998 * 119.99834 * 38.89070 * 8 7 5 10 10 C 1.39833 * 119.99481 * 218.61981 * 8 7 5 11 11 N 1.30982 * 120.00417 * 20.44082 * 10 8 7 12 12 Si 1.86806 * 119.99662 * 200.44049 * 10 8 7 13 13 H 1.48499 * 109.47338 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47193 * 120.00292 * 12 10 8 15 15 H 1.48504 * 109.46828 * 239.99828 * 12 10 8 16 16 C 1.41337 * 119.49110 * 359.41690 * 7 5 4 17 17 O 1.35724 * 120.14016 * 180.29840 * 16 7 5 18 18 C 1.42897 * 117.00022 * 90.00715 * 17 16 7 19 19 C 1.38067 * 119.71751 * 0.28184 * 16 7 5 20 20 Cl 1.73604 * 119.87159 * 179.97438 * 19 16 7 21 21 H 1.08999 * 109.47290 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47752 * 300.00439 * 1 2 3 23 23 H 1.09006 * 109.47045 * 60.00409 * 1 2 3 24 24 H 1.08004 * 119.86292 * 0.02562 * 4 3 2 25 25 H 0.96704 * 114.00058 * 275.16104 * 6 5 4 26 26 H 0.96997 * 119.99967 * 179.97438 * 11 10 8 27 27 H 1.09001 * 109.47692 * 59.99315 * 18 17 16 28 28 H 1.09003 * 109.47709 * 180.02562 * 18 17 16 29 29 H 1.09006 * 109.47058 * 299.99873 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2819 2.3728 -0.0006 5 6 1.8969 3.6079 0.0049 6 8 1.1497 4.7408 0.0100 7 6 3.3085 3.6886 -0.0015 8 6 3.9478 4.9443 -0.0025 9 1 3.5467 5.7548 0.5878 10 6 5.1046 5.1392 -0.7634 11 7 5.3756 4.3350 -1.7612 12 14 6.2638 6.5466 -0.3569 13 1 5.7347 7.3035 0.8059 14 1 7.6053 6.0030 -0.0255 15 1 6.3724 7.4524 -1.5287 16 6 4.0735 2.5001 -0.0009 17 8 5.4293 2.5623 -0.0009 18 6 6.0773 2.5925 1.2724 19 6 3.4356 1.2757 0.0000 20 17 4.3712 -0.1867 0.0002 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2038 2.3088 -0.0006 25 1 0.8667 5.0294 -0.8685 26 1 6.1779 4.4704 -2.2892 27 1 5.8254 1.6903 1.8298 28 1 7.1568 2.6424 1.1297 29 1 5.7439 3.4684 1.8290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216493527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:53 Heat of formation + Delta-G solvation = -116.067667 kcal Electronic energy + Delta-G solvation = -17697.465257 eV Core-core repulsion = 14612.134387 eV Total energy + Delta-G solvation = -3085.330870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93457 -39.37774 -38.52861 -37.14341 -35.74526 -35.01524 -31.14252 -30.29048 -28.54625 -27.27917 -26.28565 -22.86759 -22.71108 -19.73168 -19.20112 -17.90040 -17.54943 -17.02105 -16.88881 -16.45716 -16.09456 -15.79902 -15.40728 -15.00059 -14.47888 -14.02856 -13.70728 -13.52136 -13.23140 -12.90744 -12.59684 -12.39529 -12.19841 -12.09809 -12.00414 -11.67821 -11.34970 -11.18300 -10.69776 -10.39857 -9.16821 -8.89604 -8.53337 -6.22542 0.43766 0.76626 1.41585 1.44057 1.49545 1.54732 2.26676 2.53207 2.59215 3.22990 3.44841 3.86523 4.27030 4.43758 4.49199 4.55653 4.64398 4.70975 4.77367 4.81541 5.01987 5.05004 5.28630 5.44887 5.67873 5.81959 6.34743 6.60188 6.69206 6.94610 7.11370 7.29039 8.44584 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.009492 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.331918 B = 2949.203639 C = 3860.130202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C 0.040 3.960 4 C -0.189 4.189 5 C 0.029 3.971 6 O -0.495 6.495 7 C 0.040 3.960 8 C -0.485 4.485 9 H 0.073 0.927 10 C 0.062 3.938 11 N -0.789 5.789 12 Si 0.956 3.044 13 H -0.262 1.262 14 H -0.264 1.264 15 H -0.269 1.269 16 C 0.068 3.932 17 O -0.304 6.304 18 C 0.033 3.967 19 C -0.074 4.074 20 Cl -0.079 7.079 21 H 0.120 0.880 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.146 0.854 25 H 0.385 0.615 26 H 0.286 0.714 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -3.272 2.103 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.245 6.245 3 C -0.006 4.006 4 C -0.209 4.209 5 C -0.017 4.017 6 O -0.305 6.305 7 C 0.036 3.964 8 C -0.514 4.514 9 H 0.091 0.909 10 C -0.158 4.158 11 N -0.413 5.413 12 Si 0.778 3.222 13 H -0.186 1.186 14 H -0.189 1.189 15 H -0.194 1.194 16 C 0.022 3.978 17 O -0.220 6.220 18 C -0.061 4.061 19 C -0.102 4.102 20 Cl -0.050 7.050 21 H 0.138 0.862 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.164 0.836 25 H 0.241 0.759 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.115 -3.669 2.360 5.361 hybrid contribution 0.255 0.643 -0.322 0.762 sum -2.861 -3.026 2.038 4.636 Atomic orbital electron populations 1.23193 0.77408 1.04908 1.01490 1.85942 1.22516 1.25677 1.90332 1.17818 0.89236 0.84939 1.08611 1.21147 0.99983 0.90759 1.08974 1.18292 0.89195 0.85199 1.09059 1.84648 1.70348 1.41541 1.33944 1.18274 0.91078 0.93623 0.93418 1.19115 1.09424 0.96715 1.26128 0.90913 1.26294 0.97925 0.98836 0.92717 1.69817 1.24008 1.35193 1.12239 0.85550 0.78675 0.78572 0.79378 1.18584 1.18907 1.19369 1.18052 0.83809 0.89061 1.06910 1.86074 1.14951 1.93586 1.27389 1.22891 0.97720 0.99597 0.85919 1.20599 0.89460 0.86755 1.13363 1.98242 1.73343 1.36096 1.97348 0.86221 0.92609 0.92615 0.83622 0.75920 0.90386 0.94287 0.88563 0.94704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.80 113.37 1.11 1.75 15 2 O -0.33 -12.39 9.92 -90.31 -0.90 -13.29 15 3 C 0.04 1.71 6.70 22.72 0.15 1.86 15 4 C -0.19 -7.86 8.94 22.43 0.20 -7.66 15 5 C 0.03 1.33 6.73 22.99 0.15 1.49 15 6 O -0.49 -20.77 12.94 -90.36 -1.17 -21.94 15 7 C 0.04 2.05 5.38 -21.09 -0.11 1.94 15 8 C -0.49 -25.26 8.40 23.31 0.20 -25.06 15 9 H 0.07 3.83 7.91 -2.91 -0.02 3.80 15 10 C 0.06 3.03 4.39 85.21 0.37 3.40 15 11 N -0.79 -40.79 11.27 21.82 0.25 -40.55 15 12 Si 0.96 37.89 29.61 68.60 2.03 39.92 15 13 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 16 C 0.07 3.44 5.19 22.99 0.12 3.56 15 17 O -0.30 -14.96 6.75 -90.47 -0.61 -15.57 15 18 C 0.03 1.36 11.13 113.37 1.26 2.62 15 19 C -0.07 -3.50 6.34 22.46 0.14 -3.35 15 20 Cl -0.08 -3.32 28.00 -2.72 -0.08 -3.40 15 21 H 0.12 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.06 1.35 7.64 -2.39 -0.02 1.33 15 23 H 0.06 1.35 7.64 -2.38 -0.02 1.33 15 24 H 0.15 4.98 6.25 -2.91 -0.02 4.97 15 25 H 0.39 12.82 9.06 -74.05 -0.67 12.15 15 26 H 0.29 13.63 8.30 -92.71 -0.77 12.86 15 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 28 H 0.10 3.36 8.14 -2.39 -0.02 3.34 15 29 H 0.03 1.43 8.14 -2.38 -0.02 1.41 15 Total: -1.00 -61.51 272.15 3.65 -57.86 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.52 Total: 16.41 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 3.60 Total: -19.46 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.25 Total: -40.55 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -2.68 Total: -50.79 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Atomic # 17 Polarization: -3.32 SS G_CDS: -0.08 Total: -3.40 kcal Total: -61.51 3.65 -57.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216493527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.205 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds