Wall clock time and date at job start Mon Mar 30 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48505 * 109.46827 * 239.99805 * 3 2 1 5 5 H 1.48500 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47233 * 119.99464 * 3 2 1 7 7 C 1.40061 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.39896 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.38288 * 125.39722 * 180.02562 * 9 7 2 11 11 C 1.36853 * 114.20302 * 180.02562 * 10 9 7 12 12 Cl 1.73597 * 122.34491 * 179.97438 * 11 10 9 13 13 C 1.34642 * 115.30794 * 359.97438 * 11 10 9 14 14 C 1.50702 * 124.92876 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.45490 * 2.59956 * 14 13 11 16 16 C 1.54507 * 110.50864 * 240.00032 * 14 13 11 17 17 C 1.54483 * 104.06211 * 241.21582 * 16 14 13 18 18 O 1.44428 * 104.89902 * 335.96812 * 17 16 14 19 19 C 1.44688 * 105.13885 * 40.49479 * 18 17 16 20 20 S 1.75793 * 110.14254 * 0.24306 * 13 11 10 21 21 H 0.97000 * 120.00020 * 0.02562 * 1 2 3 22 22 H 1.08001 * 122.89743 * 0.02574 * 10 9 7 23 23 H 1.09005 * 110.51421 * 122.57153 * 16 14 13 24 24 H 1.09001 * 110.51335 * 359.86064 * 16 14 13 25 25 H 1.09002 * 110.37322 * 94.85326 * 17 16 14 26 26 H 1.08999 * 110.37312 * 217.08002 * 17 16 14 27 27 H 1.08996 * 110.35300 * 200.67684 * 19 18 17 28 28 H 1.08999 * 110.44929 * 78.41250 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0090 -1.2130 0.0005 8 1 3.0890 -1.2130 0.0010 9 6 1.3095 -2.4245 0.0005 10 6 1.8852 -3.6818 0.0016 11 6 0.9839 -4.7116 0.0008 12 17 1.4758 -6.3764 0.0011 13 6 -0.3111 -4.3430 -0.0003 14 6 -1.4792 -5.2952 -0.0019 15 1 -1.1299 -6.3267 0.0443 16 6 -2.3548 -5.0758 -1.2559 17 6 -3.7309 -4.6662 -0.6859 18 8 -3.7583 -5.2159 0.6494 19 6 -2.4299 -4.9923 1.1774 20 16 -0.4415 -2.5900 -0.0074 21 1 -0.4850 0.8400 -0.0004 22 1 2.9539 -3.8377 0.0029 23 1 -2.4384 -5.9988 -1.8297 24 1 -1.9441 -4.2770 -1.8735 25 1 -3.8193 -3.5803 -0.6511 26 1 -4.5332 -5.0924 -1.2882 27 1 -2.2328 -5.6705 2.0076 28 1 -2.3174 -3.9570 1.4993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216512889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:34 Heat of formation + Delta-G solvation = -57.084787 kcal Electronic energy + Delta-G solvation = -14836.989564 eV Core-core repulsion = 12196.969254 eV Total energy + Delta-G solvation = -2640.020310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82349 -36.49287 -35.01004 -33.97924 -31.99989 -29.26004 -28.17902 -24.88920 -22.45057 -21.97392 -20.13120 -18.63816 -17.61815 -15.97101 -15.70069 -15.09540 -14.67904 -14.37753 -13.96941 -12.87319 -12.82233 -12.49735 -12.16389 -12.04026 -11.60611 -11.48437 -11.04971 -10.94825 -10.74177 -10.56892 -10.46519 -10.39437 -10.08228 -9.68259 -9.41083 -9.38661 -9.06440 -7.46562 -7.16857 -6.82227 -4.69930 2.40263 2.85065 2.88666 2.94616 3.00864 3.51228 3.60476 3.81829 4.22159 4.45926 4.83974 5.27540 5.34388 5.53959 5.69957 5.82955 6.10098 6.17319 6.31480 6.44529 6.55989 6.66164 6.71175 7.01200 7.20639 7.29762 7.48172 7.77434 7.88732 8.22339 8.37280 9.67530 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.007810 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.802108 B = 3584.478054 C = 4583.276772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.052 3.948 3 Si 0.937 3.063 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.096 0.904 9 C 0.040 3.960 10 C -0.353 4.353 11 C 0.047 3.953 12 Cl -0.122 7.122 13 C -0.378 4.378 14 C -0.016 4.016 15 H 0.078 0.922 16 C -0.149 4.149 17 C 0.046 3.954 18 O -0.386 6.386 19 C 0.049 3.951 20 S 0.169 5.831 21 H 0.300 0.700 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -1.570 -0.901 3.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.169 4.169 3 Si 0.760 3.240 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.416 4.416 8 H 0.114 0.886 9 C -0.080 4.080 10 C -0.377 4.377 11 C 0.009 3.991 12 Cl -0.095 7.095 13 C -0.494 4.494 14 C -0.037 4.037 15 H 0.097 0.903 16 C -0.187 4.187 17 C -0.031 4.031 18 O -0.305 6.305 19 C -0.028 4.028 20 S 0.428 5.572 21 H 0.113 0.887 22 H 0.127 0.873 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.332 -0.749 -0.800 4.469 hybrid contribution 1.935 -0.388 -0.129 1.978 sum -2.397 -1.136 -0.929 2.811 Atomic orbital electron populations 1.68734 1.07674 1.31044 1.33448 1.26236 0.95117 1.02764 0.92772 0.85827 0.79683 0.78076 0.80385 1.18451 1.19774 1.18436 1.19167 0.95570 0.88602 1.38276 0.88576 1.21631 0.95204 0.95274 0.95938 1.19401 0.97971 0.90001 1.30347 1.19281 0.92801 0.82118 1.04854 1.98227 1.92223 1.21523 1.97479 1.24113 0.94320 1.01311 1.29690 1.20442 0.92272 0.97799 0.93145 0.90342 1.23073 0.94970 1.02025 0.98661 1.23371 0.97565 0.98246 0.83923 1.89073 1.31610 1.81119 1.28719 1.23693 0.81000 1.01339 0.96760 1.84547 1.04932 0.92258 1.75447 0.88696 0.87304 0.91609 0.89981 0.92391 0.89980 0.89812 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.91 10.65 55.56 0.59 -17.32 15 2 C 0.05 1.16 5.50 -17.28 -0.09 1.07 15 3 Si 0.94 16.77 29.56 -169.99 -5.03 11.75 15 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 7 C -0.38 -9.24 9.29 -38.28 -0.36 -9.60 15 8 H 0.10 2.21 7.85 -52.49 -0.41 1.80 15 9 C 0.04 1.02 6.19 -38.94 -0.24 0.78 15 10 C -0.35 -8.69 10.07 -40.06 -0.40 -9.10 15 11 C 0.05 1.10 6.24 -41.36 -0.26 0.84 15 12 Cl -0.12 -2.47 27.86 -51.86 -1.44 -3.92 15 13 C -0.38 -8.36 5.04 -35.58 -0.18 -8.54 15 14 C -0.02 -0.31 3.44 -90.20 -0.31 -0.62 15 15 H 0.08 1.50 6.98 -51.93 -0.36 1.14 15 16 C -0.15 -2.56 6.68 -25.16 -0.17 -2.72 15 17 C 0.05 0.73 7.62 37.94 0.29 1.02 15 18 O -0.39 -6.97 11.67 -35.23 -0.41 -7.38 15 19 C 0.05 0.89 7.16 37.93 0.27 1.16 15 20 S 0.17 3.95 19.25 -107.50 -2.07 1.88 15 21 H 0.30 6.20 8.30 -40.82 -0.34 5.86 15 22 H 0.11 2.62 8.06 -52.49 -0.42 2.20 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.08 1.49 7.57 -51.93 -0.39 1.09 15 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 28 H 0.07 1.28 7.19 -51.93 -0.37 0.90 15 LS Contribution 266.04 15.07 4.01 4.01 Total: -1.00 -25.13 266.04 -8.59 -33.72 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.79 Total: 2.98 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -1.45 Total: -25.71 kcal Atomic # 7 Polarization: -17.91 SS G_CDS: 0.59 Total: -17.32 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.41 Total: -7.38 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.07 Total: 1.88 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -1.44 Total: -3.92 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.13 -8.59 -33.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216512889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.364 kcal (2) G-P(sol) polarization free energy of solvation -25.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds