Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48505 * 109.47352 * 275.41123 * 3 2 1 5 5 H 1.48507 * 109.47338 * 35.40946 * 3 2 1 6 6 H 1.48501 * 109.47350 * 155.41436 * 3 2 1 7 7 C 1.39938 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00063 * 341.73363 * 7 2 1 9 9 C 1.41407 * 119.99880 * 161.72756 * 7 2 1 10 10 C 1.40737 * 120.24077 * 330.22697 * 9 7 2 11 11 C 1.37600 * 119.76781 * 180.02562 * 10 9 7 12 12 C 1.38646 * 120.25670 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.75398 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.47159 * 270.02201 * 13 12 11 15 15 C 1.38707 * 120.48763 * 359.97438 * 12 11 10 16 16 Br 1.89101 * 119.88161 * 179.97438 * 15 12 11 17 17 C 1.37729 * 120.23175 * 0.25617 * 15 12 11 18 18 H 0.97008 * 120.00219 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.11715 * 359.97438 * 10 9 7 20 20 H 1.07993 * 119.87259 * 179.97438 * 11 10 9 21 21 H 1.09000 * 109.46995 * 30.01933 * 13 12 11 22 22 H 1.09000 * 109.47175 * 150.01935 * 13 12 11 23 23 H 1.08000 * 120.13319 * 179.74588 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1125 -1.3939 5 1 1.5015 2.6170 0.8112 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3685 -1.2429 -0.3834 10 6 3.8635 -0.3114 -1.3150 11 6 5.1890 -0.3507 -1.6821 12 6 6.0365 -1.3038 -1.1384 13 6 7.4861 -1.3369 -1.5489 14 9 7.6370 -2.1729 -2.6604 15 6 5.5599 -2.2270 -0.2194 16 35 6.7308 -3.5199 0.5109 17 6 4.2357 -2.2089 0.1588 18 1 -0.4851 0.8401 -0.0004 19 1 3.2050 0.4313 -1.7410 20 1 5.5705 0.3630 -2.3972 21 1 7.8143 -0.3295 -1.8048 22 1 8.0887 -1.7169 -0.7240 23 1 3.8654 -2.9310 0.8714 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216524264.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -56.797261 kcal Electronic energy + Delta-G solvation = -11707.032243 eV Core-core repulsion = 9286.383539 eV Total energy + Delta-G solvation = -2420.648704 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.41743 -39.82418 -35.86307 -33.51702 -32.73300 -30.11800 -29.06931 -25.27494 -23.30686 -22.15476 -19.36396 -17.80092 -17.01477 -16.78999 -16.57381 -15.68150 -15.47277 -14.76462 -14.59672 -14.27146 -13.96923 -13.18754 -12.80362 -12.56220 -12.37969 -12.02762 -11.71052 -11.56105 -11.54803 -11.10439 -10.87018 -9.70760 -9.46090 -8.99390 -6.63500 0.42696 0.59600 0.74650 1.25474 1.39510 1.48189 2.07847 2.40170 3.27645 3.88171 3.94919 4.12957 4.31318 4.50317 4.76196 4.81013 4.89107 5.04129 5.31158 5.41883 5.63882 5.74986 5.97042 6.21091 6.53716 6.66264 8.07841 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.008321 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.368551 B = 3364.298961 C = 3903.987245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.050 3.950 3 Si 0.965 3.035 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.474 4.474 8 H 0.061 0.939 9 C 0.085 3.915 10 C -0.241 4.241 11 C -0.048 4.048 12 C -0.240 4.240 13 C 0.116 3.884 14 F -0.228 7.228 15 C -0.030 4.030 16 Br -0.060 7.060 17 C -0.198 4.198 18 H 0.298 0.702 19 H 0.110 0.890 20 H 0.143 0.857 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.562 0.323 -0.131 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.167 4.167 3 Si 0.787 3.213 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.081 3.919 10 C -0.260 4.260 11 C -0.067 4.067 12 C -0.243 4.243 13 C 0.062 3.938 14 F -0.210 7.210 15 C -0.109 4.109 16 Br 0.025 6.975 17 C -0.219 4.219 18 H 0.109 0.891 19 H 0.128 0.872 20 H 0.160 0.840 21 H 0.122 0.878 22 H 0.106 0.894 23 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.712 -0.116 0.141 12.713 hybrid contribution -0.805 0.493 -0.012 0.944 sum 11.907 0.376 0.128 11.914 Atomic orbital electron populations 1.69702 1.09304 1.32028 1.34975 1.26898 0.95379 1.04400 0.90052 0.85493 0.79749 0.76082 0.79979 1.17569 1.20154 1.17344 1.19519 0.94057 0.96018 1.40606 0.92068 1.17838 0.92504 0.91530 0.90031 1.21271 0.96792 1.04589 1.03393 1.20861 0.92334 0.96512 0.96981 1.19774 0.97682 1.01607 1.05261 1.20823 0.92337 0.94760 0.85921 1.92741 1.96644 1.75148 1.56427 1.21554 0.93728 0.95714 0.99875 1.96482 1.62468 1.54273 1.84269 1.21072 0.91678 1.04313 1.04853 0.89091 0.87186 0.83953 0.87775 0.89433 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.61 13.93 21.82 0.30 -43.31 14 2 C 0.05 2.52 5.40 85.26 0.46 2.98 14 3 Si 0.96 39.73 24.52 68.60 1.68 41.41 14 4 H -0.25 -9.57 6.71 99.48 0.67 -8.91 14 5 H -0.28 -10.67 7.11 99.48 0.71 -9.97 14 6 H -0.25 -10.48 6.86 99.48 0.68 -9.80 14 7 C -0.47 -25.45 9.57 23.46 0.22 -25.23 14 8 H 0.06 3.56 8.06 -2.91 -0.02 3.53 14 9 C 0.08 4.16 5.10 -21.29 -0.11 4.05 14 10 C -0.24 -10.68 7.18 22.73 0.16 -10.51 14 11 C -0.05 -1.83 9.67 22.22 0.21 -1.61 14 12 C -0.24 -8.96 5.62 -19.66 -0.11 -9.07 14 13 C 0.12 3.44 7.20 71.23 0.51 3.96 14 14 F -0.23 -7.65 17.34 44.97 0.78 -6.87 14 15 C -0.03 -1.19 6.21 22.26 0.14 -1.05 14 16 Br -0.06 -1.98 31.74 -20.37 -0.65 -2.63 14 17 C -0.20 -9.02 9.53 22.75 0.22 -8.80 14 18 H 0.30 13.86 8.30 -92.70 -0.77 13.09 14 19 H 0.11 4.76 4.74 -2.91 -0.01 4.75 14 20 H 0.14 4.32 8.06 -2.91 -0.02 4.30 14 21 H 0.10 2.41 8.08 -2.39 -0.02 2.39 14 22 H 0.09 2.39 6.62 -2.39 -0.02 2.37 14 23 H 0.11 4.95 8.06 -2.91 -0.02 4.93 14 Total: -1.00 -54.99 225.59 5.00 -49.99 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.17 Total: 6.69 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 1.71 Total: -45.29 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.30 Total: -43.31 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.78 Total: -6.87 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.68 Total: 41.41 kcal Atomic # 35 Polarization: -1.98 SS G_CDS: -0.65 Total: -2.63 kcal Total: -54.99 5.00 -49.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524264.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -54.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds