Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38495 * 119.73383 * 2 1 4 4 C 1.37943 * 120.22471 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.15262 * 180.02562 * 4 3 2 6 6 C 1.41013 * 119.69548 * 0.27844 * 4 3 2 7 7 C 1.41285 * 120.25953 * 179.70372 * 6 4 3 8 8 H 1.08007 * 120.00503 * 24.43216 * 7 6 4 9 9 C 1.39931 * 120.00213 * 204.44087 * 7 6 4 10 10 N 1.30852 * 119.99834 * 17.64339 * 9 7 6 11 11 Si 1.86799 * 120.00404 * 197.65028 * 9 7 6 12 12 H 1.48498 * 109.47123 * 59.99680 * 11 9 7 13 13 H 1.48498 * 109.47468 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47102 * 299.99513 * 11 9 7 15 15 C 1.40688 * 119.47907 * 359.48867 * 6 4 3 16 16 C 1.37666 * 119.76668 * 0.49373 * 15 6 4 17 17 Br 1.89096 * 119.84964 * 179.74242 * 16 15 6 18 18 H 1.08996 * 109.46940 * 89.99494 * 1 2 3 19 19 H 1.08998 * 109.47110 * 210.00089 * 1 2 3 20 20 H 1.09007 * 109.46645 * 329.99821 * 1 2 3 21 21 H 1.07999 * 119.88717 * 0.02651 * 3 2 1 22 22 H 0.96996 * 119.99920 * 180.02562 * 10 9 7 23 23 H 1.07998 * 120.11843 * 180.24672 * 15 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1940 1.2026 0.0000 4 6 3.5734 1.2144 -0.0005 5 9 4.2419 2.3884 0.0000 6 6 4.2824 -0.0045 -0.0070 7 6 5.6952 -0.0062 -0.0140 8 1 6.2383 0.8437 0.3724 9 6 6.3910 -1.1091 -0.5215 10 7 5.7781 -1.9717 -1.2912 11 14 8.1949 -1.3501 -0.1002 12 1 8.3468 -1.4764 1.3716 13 1 8.6960 -2.5842 -0.7567 14 1 8.9757 -0.1816 -0.5800 15 6 3.5719 -1.2188 -0.0020 16 6 2.1953 -1.2052 -0.0010 17 35 1.2380 -2.8359 -0.0016 18 1 -0.3633 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6478 2.1343 0.0004 22 1 6.2603 -2.7364 -1.6427 23 1 4.1045 -2.1583 -0.0028 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216524399.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = -43.569090 kcal Electronic energy + Delta-G solvation = -11800.849545 eV Core-core repulsion = 9380.774458 eV Total energy + Delta-G solvation = -2420.075087 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.38155 -37.74674 -34.26750 -31.38272 -30.75282 -27.91990 -27.60247 -24.01075 -21.34253 -20.20613 -17.49596 -15.84104 -15.50587 -14.77191 -14.22884 -14.18319 -12.92647 -12.85985 -12.74441 -12.43692 -11.73648 -11.66766 -11.18863 -11.05209 -10.95768 -10.68138 -10.12416 -9.86771 -9.71598 -9.26398 -9.21641 -7.68961 -7.40209 -6.97585 -4.56407 2.34005 2.55567 2.66461 2.98284 3.00201 3.05153 3.79461 4.28877 5.21569 5.62861 5.87702 5.97875 6.25620 6.28625 6.47798 6.75482 6.80033 6.99742 7.11163 7.31635 7.55324 7.75318 7.82373 8.26712 8.54058 8.59074 9.95051 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.009792 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.572110 B = 2858.835966 C = 3896.733847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.173 4.173 3 C -0.112 4.112 4 C -0.018 4.018 5 F -0.159 7.159 6 C 0.085 3.915 7 C -0.446 4.446 8 H 0.087 0.913 9 C 0.075 3.925 10 N -0.781 5.781 11 Si 0.916 3.084 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.263 1.263 15 C -0.118 4.118 16 C -0.060 4.060 17 Br -0.100 7.100 18 H 0.052 0.948 19 H 0.061 0.939 20 H 0.050 0.950 21 H 0.109 0.891 22 H 0.288 0.712 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -2.297 1.629 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.176 4.176 3 C -0.132 4.132 4 C -0.038 4.038 5 F -0.138 7.138 6 C 0.081 3.919 7 C -0.475 4.475 8 H 0.105 0.895 9 C -0.145 4.145 10 N -0.405 5.405 11 Si 0.740 3.260 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.187 1.187 15 C -0.139 4.139 16 C -0.139 4.139 17 Br -0.015 7.015 18 H 0.071 0.929 19 H 0.080 0.920 20 H 0.069 0.931 21 H 0.127 0.873 22 H 0.099 0.901 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.558 -3.088 1.472 6.526 hybrid contribution 1.140 0.423 0.014 1.216 sum -4.418 -2.665 1.485 5.369 Atomic orbital electron populations 1.20591 0.92261 1.01443 1.00879 1.18762 0.94639 0.90805 1.13439 1.20285 0.92156 0.96821 1.03935 1.17859 0.89336 0.81083 1.15542 1.91288 1.81314 1.46146 1.95063 1.17530 0.93921 0.89135 0.91311 1.19517 0.90795 1.02528 1.34631 0.89502 1.25974 1.01643 0.94530 0.92360 1.69783 1.39233 1.10578 1.20939 0.86219 0.80948 0.78711 0.80169 1.18500 1.20026 1.18693 1.21172 0.89991 0.99199 1.03544 1.21325 0.94372 0.88329 1.09851 1.96388 1.75939 1.31129 1.98036 0.92912 0.92026 0.93062 0.87290 0.90133 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.54 36.01 0.34 -1.30 14 2 C -0.17 -3.72 5.90 -104.32 -0.62 -4.34 14 3 C -0.11 -2.49 9.65 -39.59 -0.38 -2.87 14 4 C -0.02 -0.44 7.31 -38.64 -0.28 -0.72 14 5 F -0.16 -3.91 16.71 2.25 0.04 -3.88 14 6 C 0.09 2.24 5.58 -106.76 -0.60 1.64 14 7 C -0.45 -11.60 8.78 -37.79 -0.33 -11.93 14 8 H 0.09 2.21 7.73 -52.48 -0.41 1.81 14 9 C 0.07 1.81 5.14 -17.34 -0.09 1.72 14 10 N -0.78 -19.34 10.96 55.55 0.61 -18.73 14 11 Si 0.92 18.03 29.59 -169.99 -5.03 13.00 14 12 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 13 H -0.28 -5.24 7.11 56.52 0.40 -4.84 14 14 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 15 C -0.12 -2.95 8.42 -38.87 -0.33 -3.28 14 16 C -0.06 -1.36 6.21 -39.59 -0.25 -1.61 14 17 Br -0.10 -1.90 31.74 -68.01 -2.16 -4.06 14 18 H 0.05 0.87 8.14 -51.93 -0.42 0.44 14 19 H 0.06 1.03 6.61 -51.93 -0.34 0.68 14 20 H 0.05 0.79 8.08 -51.93 -0.42 0.37 14 21 H 0.11 2.12 8.06 -52.49 -0.42 1.70 14 22 H 0.29 6.45 8.30 -40.82 -0.34 6.11 14 23 H 0.14 3.52 6.17 -52.49 -0.32 3.20 14 LS Contribution 229.94 15.07 3.47 3.47 Total: -1.00 -25.76 229.94 -7.08 -32.83 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -1.47 Total: 0.05 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -2.53 Total: -22.69 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.61 Total: -18.73 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 35 Polarization: -1.90 SS G_CDS: -2.16 Total: -4.06 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -25.76 -7.08 -32.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524399.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.735 kcal (2) G-P(sol) polarization free energy of solvation -25.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds