Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37742 * 120.10530 * 2 1 4 4 Br 1.89094 * 119.87268 * 359.95700 * 3 2 1 5 5 C 1.38664 * 120.24787 * 179.97438 * 3 2 1 6 6 C 1.38864 * 120.47016 * 359.97438 * 5 3 2 7 7 F 1.35102 * 119.89928 * 179.97438 * 6 5 3 8 8 C 1.37831 * 120.20440 * 359.74877 * 6 5 3 9 9 C 1.40695 * 120.10528 * 179.97438 * 2 1 3 10 10 C 1.41398 * 120.22547 * 0.02562 * 9 2 1 11 11 H 1.07997 * 120.00103 * 334.57037 * 10 9 2 12 12 C 1.39936 * 119.99863 * 154.58334 * 10 9 2 13 13 N 1.30828 * 120.00129 * 334.65734 * 12 10 9 14 14 Si 1.86799 * 120.00060 * 154.66468 * 12 10 9 15 15 H 1.48498 * 109.47153 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47133 * 299.99691 * 14 12 10 17 17 H 1.48504 * 109.47308 * 59.99873 * 14 12 10 18 18 H 1.09007 * 109.46717 * 270.02108 * 1 2 3 19 19 H 1.08995 * 109.47012 * 30.01994 * 1 2 3 20 20 H 1.08991 * 109.47154 * 150.02504 * 1 2 3 21 21 H 1.08009 * 119.76351 * 179.97438 * 5 3 2 22 22 H 1.07999 * 120.12992 * 180.27523 * 8 6 5 23 23 H 0.96999 * 119.99399 * 354.19551 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1980 1.1916 0.0000 4 35 1.2519 2.8289 -0.0012 5 6 3.5846 1.1951 0.0005 6 6 4.2917 0.0000 0.0016 7 9 5.6426 0.0168 0.0016 8 6 3.6197 -1.2034 0.0074 9 6 2.2128 -1.2172 0.0005 10 6 1.5129 -2.4458 0.0005 11 1 0.5115 -2.4968 0.4018 12 6 2.1178 -3.5956 -0.5191 13 7 3.0608 -3.4886 -1.4197 14 14 1.5789 -5.2834 0.0729 15 1 2.3678 -6.3287 -0.6272 16 1 1.8045 -5.3898 1.5368 17 1 0.1357 -5.4734 -0.2207 18 1 -0.3633 0.0004 1.0277 19 1 -0.3633 0.8898 -0.5141 20 1 -0.3633 -0.8901 -0.5134 21 1 4.1184 2.1340 0.0001 22 1 4.1709 -2.1321 0.0127 23 1 3.2824 -2.6194 -1.7888 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216524475.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -60.562987 kcal Electronic energy + Delta-G solvation = -11849.569496 eV Core-core repulsion = 9428.757498 eV Total energy + Delta-G solvation = -2420.811998 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.79360 -39.87557 -36.04999 -33.38148 -32.57375 -30.15841 -27.96819 -26.67648 -23.16407 -22.08761 -19.94442 -17.70920 -17.49875 -16.49835 -16.25267 -15.73273 -15.21640 -14.73872 -14.55846 -14.27146 -13.81717 -12.94199 -12.83312 -12.70415 -12.45057 -12.13053 -11.97329 -11.57271 -11.39450 -11.02155 -10.90969 -9.69305 -9.49325 -9.15357 -6.63024 0.39933 0.56115 0.70996 1.53069 1.60249 1.81365 2.29992 2.44394 3.21351 3.58668 4.20708 4.32810 4.37552 4.64187 4.89776 4.94776 4.97356 5.27327 5.38023 5.46942 5.61359 5.66867 5.95032 6.06387 6.52083 6.73662 7.91429 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.008296 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.234405 B = 3374.484305 C = 4168.946187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.181 4.181 3 C -0.027 4.027 4 Br -0.046 7.046 5 C -0.265 4.265 6 C 0.119 3.881 7 F -0.158 7.158 8 C -0.270 4.270 9 C 0.094 3.906 10 C -0.517 4.517 11 H 0.097 0.903 12 C 0.004 3.996 13 N -0.804 5.804 14 Si 1.116 2.884 15 H -0.275 1.275 16 H -0.263 1.263 17 H -0.250 1.250 18 H 0.065 0.935 19 H 0.070 0.930 20 H 0.062 0.938 21 H 0.131 0.869 22 H 0.103 0.897 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 5.884 2.279 8.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 C -0.106 4.106 4 Br 0.039 6.961 5 C -0.287 4.287 6 C 0.099 3.901 7 F -0.137 7.137 8 C -0.290 4.290 9 C 0.089 3.911 10 C -0.544 4.544 11 H 0.115 0.885 12 C -0.215 4.215 13 N -0.425 5.425 14 Si 0.932 3.068 15 H -0.200 1.200 16 H -0.187 1.187 17 H -0.174 1.174 18 H 0.084 0.916 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.148 0.852 22 H 0.121 0.879 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.054 4.920 2.074 7.352 hybrid contribution 0.736 1.425 -0.028 1.604 sum -4.318 6.345 2.045 7.943 Atomic orbital electron populations 1.20584 0.89864 1.02374 1.01780 1.20056 0.97081 0.90718 1.10540 1.21176 0.93355 0.90772 1.05329 1.96447 1.75369 1.26530 1.97742 1.20304 0.92755 0.96246 1.19368 1.17529 0.75572 0.94827 1.02163 1.91363 1.30368 1.97602 1.94331 1.21127 0.95591 0.95408 1.16905 1.17536 0.90534 0.93399 0.89605 1.20887 1.03987 0.93507 1.35983 0.88548 1.28576 0.91685 1.09234 0.91958 1.70577 1.23418 1.30766 1.17782 0.83019 0.77851 0.68721 0.77215 1.20009 1.18713 1.17378 0.91643 0.91136 0.91911 0.85156 0.87918 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.36 8.94 71.24 0.64 -2.73 14 2 C -0.18 -8.11 5.94 -19.38 -0.12 -8.22 14 3 C -0.03 -1.14 6.21 22.25 0.14 -1.00 14 4 Br -0.05 -1.53 31.75 -20.37 -0.65 -2.18 14 5 C -0.27 -11.61 9.77 22.52 0.22 -11.39 14 6 C 0.12 5.71 7.29 22.32 0.16 5.87 14 7 F -0.16 -7.26 17.26 44.97 0.78 -6.48 14 8 C -0.27 -13.82 7.92 22.77 0.18 -13.64 14 9 C 0.09 4.68 5.29 -21.30 -0.11 4.57 14 10 C -0.52 -25.17 8.07 23.46 0.19 -24.98 14 11 H 0.10 4.40 6.92 -2.91 -0.02 4.38 14 12 C 0.00 0.18 4.94 85.25 0.42 0.60 14 13 N -0.80 -41.40 12.32 21.82 0.27 -41.13 14 14 Si 1.12 39.64 30.00 68.60 2.06 41.70 14 15 H -0.28 -9.87 7.11 99.48 0.71 -9.16 14 16 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 17 H -0.25 -7.94 7.11 99.48 0.71 -7.23 14 18 H 0.06 2.27 8.14 -2.38 -0.02 2.25 14 19 H 0.07 2.38 6.63 -2.39 -0.02 2.37 14 20 H 0.06 2.40 6.77 -2.39 -0.02 2.38 14 21 H 0.13 5.13 8.06 -2.91 -0.02 5.10 14 22 H 0.10 5.54 6.51 -2.91 -0.02 5.52 14 23 H 0.29 15.46 6.69 -92.71 -0.62 14.84 14 Total: -1.00 -52.30 226.74 5.56 -46.73 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.39 Total: 12.27 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 1.72 Total: -50.92 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.27 Total: -41.13 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.78 Total: -6.48 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.06 Total: 41.70 kcal Atomic # 35 Polarization: -1.53 SS G_CDS: -0.65 Total: -2.18 kcal Total: -52.30 5.56 -46.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524475.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.829 kcal (2) G-P(sol) polarization free energy of solvation -52.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds