Wall clock time and date at job start Mon Mar 30 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38666 * 119.75718 * 2 1 4 4 C 1.37572 * 120.29819 * 180.02562 * 3 2 1 5 5 C 1.40753 * 119.80990 * 0.24016 * 4 3 2 6 6 C 1.41353 * 120.24023 * 179.72522 * 5 4 3 7 7 H 1.07997 * 119.99619 * 205.28956 * 6 5 4 8 8 C 1.39933 * 119.99649 * 25.29070 * 6 5 4 9 9 N 1.30828 * 120.00421 * 15.39624 * 8 6 5 10 10 Si 1.86804 * 119.99537 * 195.39511 * 8 6 5 11 11 H 1.48491 * 109.47073 * 60.00295 * 10 8 6 12 12 H 1.48506 * 109.46971 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47345 * 299.99918 * 10 8 6 14 14 C 1.40765 * 119.51583 * 359.51009 * 5 4 3 15 15 Br 1.89099 * 120.15053 * 180.24544 * 14 5 4 16 16 C 1.37992 * 119.69525 * 0.49093 * 14 5 4 17 17 F 1.35101 * 119.90471 * 179.72636 * 16 14 5 18 18 H 1.08998 * 109.46866 * 90.00363 * 1 2 3 19 19 H 1.08998 * 109.47345 * 210.00611 * 1 2 3 20 20 H 1.09000 * 109.46891 * 330.00636 * 1 2 3 21 21 H 1.07997 * 119.84472 * 0.03828 * 3 2 1 22 22 H 1.08004 * 120.09154 * 179.97438 * 4 3 2 23 23 H 0.97005 * 120.00069 * 184.96992 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2038 0.0000 4 6 3.5709 1.2168 -0.0005 5 6 4.2821 0.0022 -0.0062 6 6 5.6956 0.0049 -0.0126 7 1 6.2353 -0.8389 -0.4164 8 6 6.3954 1.1010 0.5041 9 7 5.7783 1.9758 1.2560 10 14 8.2111 1.3150 0.1203 11 1 8.3961 1.4312 -1.3485 12 1 8.7153 2.5451 0.7821 13 1 8.9653 0.1386 0.6227 14 6 3.5755 -1.2152 -0.0008 15 35 4.5129 -2.8575 -0.0013 16 6 2.1956 -1.2047 -0.0003 17 9 1.5132 -2.3707 -0.0007 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5137 21 1 1.6488 2.1353 0.0006 22 1 4.1036 2.1564 -0.0009 23 1 6.2437 2.7728 1.5547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216524542.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:32 Heat of formation + Delta-G solvation = -42.117615 kcal Electronic energy + Delta-G solvation = -11833.387608 eV Core-core repulsion = 9413.375462 eV Total energy + Delta-G solvation = -2420.012146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.87471 -37.64466 -34.12667 -31.79609 -30.04575 -27.92232 -27.62480 -23.99757 -21.08808 -20.41177 -17.79695 -15.79621 -15.35822 -14.87555 -14.66340 -14.13039 -13.14004 -12.62899 -12.52028 -12.25292 -11.82766 -11.76751 -11.29144 -11.18424 -10.68019 -10.57072 -10.32503 -9.75291 -9.56681 -9.30077 -8.88382 -7.54018 -7.39053 -7.00491 -4.64619 2.44097 2.53450 2.97221 2.99707 3.04410 3.06104 3.78414 4.31498 5.26991 5.43344 5.90222 5.95293 6.26435 6.29941 6.48399 6.68472 6.78775 6.95644 7.25022 7.32683 7.64648 7.70783 7.94994 8.31337 8.55386 8.57646 9.91459 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.011737 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.177105 B = 2385.146137 C = 3492.265634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.246 4.246 3 C -0.072 4.072 4 C -0.159 4.159 5 C 0.144 3.856 6 C -0.437 4.437 7 H 0.094 0.906 8 C 0.077 3.923 9 N -0.780 5.780 10 Si 0.913 3.087 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.261 1.261 14 C -0.231 4.231 15 Br -0.089 7.089 16 C 0.149 3.851 17 F -0.153 7.153 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.103 0.897 22 H 0.131 0.869 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -2.017 -1.609 2.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.249 4.249 3 C -0.091 4.091 4 C -0.179 4.179 5 C 0.139 3.861 6 C -0.465 4.465 7 H 0.112 0.888 8 C -0.143 4.143 9 N -0.404 5.404 10 Si 0.737 3.263 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.312 4.312 15 Br -0.004 7.004 16 C 0.128 3.872 17 F -0.131 7.131 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.121 0.879 22 H 0.148 0.852 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.978 -2.488 -1.398 3.017 hybrid contribution 0.471 0.380 -0.050 0.608 sum -0.507 -2.108 -1.449 2.608 Atomic orbital electron populations 1.20320 0.92337 1.01008 1.00365 1.19071 0.94864 0.91505 1.19419 1.20505 0.94480 0.95156 0.98997 1.21400 0.92292 0.98544 1.05677 1.17250 0.93507 0.88650 0.86668 1.19838 0.90922 1.03209 1.32516 0.88841 1.25994 1.01688 0.94752 0.91898 1.69793 1.39730 1.08848 1.22022 0.86251 0.81142 0.78810 0.80112 1.18475 1.20084 1.18490 1.21522 0.90978 0.91187 1.27529 1.96282 1.77775 1.27989 1.98369 1.16978 0.88062 0.80392 1.01762 1.91361 1.80257 1.47430 1.94081 0.93348 0.93139 0.92856 0.87911 0.85170 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.82 36.01 0.35 -1.13 14 2 C -0.25 -5.39 5.91 -104.27 -0.62 -6.01 14 3 C -0.07 -1.59 9.66 -39.67 -0.38 -1.98 14 4 C -0.16 -3.86 8.69 -38.87 -0.34 -4.20 14 5 C 0.14 3.68 5.57 -106.81 -0.60 3.09 14 6 C -0.44 -10.97 8.46 -37.76 -0.32 -11.29 14 7 H 0.09 2.30 6.88 -52.49 -0.36 1.94 14 8 C 0.08 1.80 5.19 -17.34 -0.09 1.71 14 9 N -0.78 -18.71 10.86 55.55 0.60 -18.10 14 10 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 14 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 12 H -0.28 -5.16 7.11 56.52 0.40 -4.76 14 13 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 14 C -0.23 -5.72 6.29 -38.72 -0.24 -5.97 14 15 Br -0.09 -1.96 31.67 -68.01 -2.15 -4.11 14 16 C 0.15 3.53 7.19 -39.48 -0.28 3.25 14 17 F -0.15 -3.45 15.90 2.25 0.04 -3.41 14 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14 19 H 0.05 0.87 7.62 -51.93 -0.40 0.48 14 20 H 0.05 0.84 8.08 -51.93 -0.42 0.42 14 21 H 0.10 1.96 8.06 -52.49 -0.42 1.53 14 22 H 0.13 3.18 6.13 -52.48 -0.32 2.86 14 23 H 0.29 6.22 8.30 -40.82 -0.34 5.88 14 LS Contribution 229.33 15.07 3.46 3.46 Total: -1.00 -25.50 229.33 -7.08 -32.58 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -1.48 Total: -0.52 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.52 Total: -22.53 kcal Atomic # 7 Polarization: -18.71 SS G_CDS: 0.60 Total: -18.10 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 35 Polarization: -1.96 SS G_CDS: -2.15 Total: -4.11 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -25.50 -7.08 -32.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524542.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.536 kcal (2) G-P(sol) polarization free energy of solvation -25.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds