Wall clock time and date at job start Mon Mar 30 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38666 * 119.75718 * 2 1 4 4 C 1.37572 * 120.29819 * 180.02562 * 3 2 1 5 5 C 1.40753 * 119.80990 * 0.24016 * 4 3 2 6 6 C 1.41353 * 120.24023 * 179.72522 * 5 4 3 7 7 H 1.07997 * 119.99619 * 205.28956 * 6 5 4 8 8 C 1.39933 * 119.99649 * 25.29070 * 6 5 4 9 9 N 1.30828 * 120.00421 * 15.39624 * 8 6 5 10 10 Si 1.86804 * 119.99537 * 195.39511 * 8 6 5 11 11 H 1.48491 * 109.47073 * 60.00295 * 10 8 6 12 12 H 1.48506 * 109.46971 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47345 * 299.99918 * 10 8 6 14 14 C 1.40765 * 119.51583 * 359.51009 * 5 4 3 15 15 Br 1.89099 * 120.15053 * 180.24544 * 14 5 4 16 16 C 1.37992 * 119.69525 * 0.49093 * 14 5 4 17 17 F 1.35101 * 119.90471 * 179.72636 * 16 14 5 18 18 H 1.08998 * 109.46866 * 90.00363 * 1 2 3 19 19 H 1.08998 * 109.47345 * 210.00611 * 1 2 3 20 20 H 1.09000 * 109.46891 * 330.00636 * 1 2 3 21 21 H 1.07997 * 119.84472 * 0.03828 * 3 2 1 22 22 H 1.08004 * 120.09154 * 179.97438 * 4 3 2 23 23 H 0.97005 * 120.00069 * 184.96992 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2038 0.0000 4 6 3.5709 1.2168 -0.0005 5 6 4.2821 0.0022 -0.0062 6 6 5.6956 0.0049 -0.0126 7 1 6.2353 -0.8389 -0.4164 8 6 6.3954 1.1010 0.5041 9 7 5.7783 1.9758 1.2560 10 14 8.2111 1.3150 0.1203 11 1 8.3961 1.4312 -1.3485 12 1 8.7153 2.5451 0.7821 13 1 8.9653 0.1386 0.6227 14 6 3.5755 -1.2152 -0.0008 15 35 4.5129 -2.8575 -0.0013 16 6 2.1956 -1.2047 -0.0003 17 9 1.5132 -2.3707 -0.0007 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5137 21 1 1.6488 2.1353 0.0006 22 1 4.1036 2.1564 -0.0009 23 1 6.2437 2.7728 1.5547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216524542.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:31 Heat of formation + Delta-G solvation = -54.027960 kcal Electronic energy + Delta-G solvation = -11833.904080 eV Core-core repulsion = 9413.375462 eV Total energy + Delta-G solvation = -2420.528618 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.66939 -39.42189 -35.88061 -33.53170 -31.80849 -29.71712 -29.32526 -25.70832 -22.89602 -22.15795 -19.60263 -17.57603 -17.14490 -16.60056 -16.44503 -15.84118 -14.80763 -14.31365 -14.07716 -13.94657 -13.48797 -13.35499 -12.92850 -12.84340 -12.35899 -12.19907 -11.99200 -11.50464 -11.32843 -11.03603 -10.67210 -9.33432 -9.20910 -8.75501 -6.49498 0.63336 0.74746 1.21803 1.40217 1.49201 1.52446 2.18497 2.55450 3.43772 3.65121 4.27819 4.43000 4.65892 4.89650 4.94046 4.94078 5.14318 5.21584 5.49358 5.55329 5.83405 5.90932 6.15020 6.48197 6.73350 6.75128 8.19421 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.011737 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.177105 B = 2385.146137 C = 3492.265634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.243 4.243 3 C -0.070 4.070 4 C -0.178 4.178 5 C 0.117 3.883 6 C -0.467 4.467 7 H 0.088 0.912 8 C 0.043 3.957 9 N -0.806 5.806 10 Si 0.979 3.021 11 H -0.257 1.257 12 H -0.263 1.263 13 H -0.262 1.262 14 C -0.256 4.256 15 Br -0.075 7.075 16 C 0.130 3.870 17 F -0.149 7.149 18 H 0.065 0.935 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -1.407 -1.720 2.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.246 4.246 3 C -0.088 4.088 4 C -0.198 4.198 5 C 0.113 3.887 6 C -0.494 4.494 7 H 0.106 0.894 8 C -0.175 4.175 9 N -0.430 5.430 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.187 1.187 13 H -0.186 1.186 14 C -0.337 4.337 15 Br 0.009 6.991 16 C 0.109 3.891 17 F -0.128 7.128 18 H 0.084 0.916 19 H 0.071 0.929 20 H 0.095 0.905 21 H 0.153 0.847 22 H 0.141 0.859 23 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.334 -1.883 -1.507 2.756 hybrid contribution 0.476 0.163 -0.004 0.503 sum -0.858 -1.720 -1.511 2.445 Atomic orbital electron populations 1.20394 0.89148 1.02375 1.01902 1.19607 0.97249 0.90700 1.17002 1.20852 0.93819 0.96667 0.97471 1.21471 0.93464 0.97964 1.06923 1.17583 0.94209 0.89473 0.87469 1.19998 0.91192 1.04207 1.34043 0.89384 1.26734 1.05597 0.93983 0.91191 1.69806 1.41518 1.09382 1.22290 0.85272 0.75831 0.78993 0.79971 1.18140 1.18687 1.18621 1.21812 0.91858 0.91910 1.28137 1.96240 1.77718 1.26722 1.98371 1.17240 0.88054 0.81247 1.02539 1.91358 1.80029 1.47320 1.94117 0.91601 0.92865 0.90454 0.84664 0.85886 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.63 9.82 71.24 0.70 -1.93 14 2 C -0.24 -10.21 5.91 -19.64 -0.12 -10.32 14 3 C -0.07 -2.94 9.66 22.21 0.21 -2.73 14 4 C -0.18 -8.65 8.69 22.73 0.20 -8.45 14 5 C 0.12 6.06 5.57 -21.28 -0.12 5.94 14 6 C -0.47 -23.72 8.46 23.45 0.20 -23.52 14 7 H 0.09 4.42 6.88 -2.91 -0.02 4.40 14 8 C 0.04 2.01 5.19 85.25 0.44 2.45 14 9 N -0.81 -38.59 10.86 21.82 0.24 -38.35 14 10 Si 0.98 35.78 29.59 68.60 2.03 37.81 14 11 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 12 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 13 H -0.26 -9.54 7.11 99.48 0.71 -8.84 14 14 C -0.26 -12.73 6.29 22.83 0.14 -12.58 14 15 Br -0.07 -3.31 31.67 -20.37 -0.65 -3.96 14 16 C 0.13 6.07 7.19 22.34 0.16 6.23 14 17 F -0.15 -6.61 15.90 44.97 0.72 -5.90 14 18 H 0.07 1.93 8.14 -2.39 -0.02 1.91 14 19 H 0.05 1.69 7.62 -2.39 -0.02 1.67 14 20 H 0.08 2.13 8.08 -2.39 -0.02 2.11 14 21 H 0.14 4.75 8.06 -2.91 -0.02 4.72 14 22 H 0.12 6.05 6.13 -2.91 -0.02 6.04 14 23 H 0.30 12.68 8.30 -92.70 -0.77 11.91 14 Total: -1.00 -53.52 229.33 5.39 -48.13 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.23 Total: 7.19 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 1.82 Total: -44.92 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.24 Total: -38.35 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.72 Total: -5.90 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Atomic # 35 Polarization: -3.31 SS G_CDS: -0.65 Total: -3.96 kcal Total: -53.52 5.39 -48.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524542.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.897 kcal (2) G-P(sol) polarization free energy of solvation -53.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds