Wall clock time and date at job start Mon Mar 30 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37619 * 120.09479 * 2 1 4 4 C 1.38623 * 120.29957 * 180.02562 * 3 2 1 5 5 C 1.38807 * 120.49187 * 0.27650 * 4 3 2 6 6 F 1.35091 * 119.90742 * 179.72669 * 5 4 3 7 7 C 1.37963 * 120.18393 * 359.48696 * 5 4 3 8 8 Br 1.89104 * 120.15064 * 180.27448 * 7 5 4 9 9 C 1.40714 * 120.09757 * 180.02562 * 2 1 3 10 10 C 1.41348 * 120.24489 * 359.97438 * 9 2 1 11 11 H 1.07999 * 119.99909 * 310.46562 * 10 9 2 12 12 C 1.39935 * 120.00017 * 130.45824 * 10 9 2 13 13 N 1.30838 * 120.00179 * 155.33246 * 12 10 9 14 14 Si 1.86799 * 120.00310 * 335.32640 * 12 10 9 15 15 H 1.48499 * 109.47186 * 95.34118 * 14 12 10 16 16 H 1.48501 * 109.47357 * 215.34573 * 14 12 10 17 17 H 1.48503 * 109.46859 * 335.34582 * 14 12 10 18 18 H 1.09002 * 109.47225 * 89.99749 * 1 2 3 19 19 H 1.09003 * 109.46884 * 209.99899 * 1 2 3 20 20 H 1.09006 * 109.46942 * 329.99760 * 1 2 3 21 21 H 1.07998 * 119.84663 * 0.02562 * 3 2 1 22 22 H 1.07998 * 119.75115 * 179.97438 * 4 3 2 23 23 H 0.96992 * 120.00143 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1907 0.0000 4 6 3.5833 1.1956 -0.0005 5 6 4.2919 0.0021 -0.0068 6 9 5.6427 0.0207 -0.0129 7 6 3.6206 -1.2032 -0.0020 8 35 4.5870 -2.8287 -0.0028 9 6 2.2127 -1.2174 -0.0005 10 6 1.5133 -2.4457 -0.0005 11 1 0.7189 -2.6148 0.7113 12 6 1.8501 -3.4427 -0.9230 13 7 1.5889 -4.6965 -0.6557 14 14 2.6724 -2.9834 -2.5361 15 1 4.1446 -3.1199 -2.3978 16 1 2.1904 -3.8862 -3.6121 17 1 2.3358 -1.5787 -2.8809 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6562 2.1254 0.0004 22 1 4.1159 2.1352 -0.0009 23 1 1.8220 -5.3875 -1.2952 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216524671.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:13 Heat of formation + Delta-G solvation = -29.649013 kcal Electronic energy + Delta-G solvation = -12125.865699 eV Core-core repulsion = 9706.394232 eV Total energy + Delta-G solvation = -2419.471467 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.06755 -38.03088 -33.69209 -31.75366 -31.03683 -28.71789 -26.21524 -24.77721 -21.32591 -20.04913 -17.85436 -16.28106 -15.36140 -14.92040 -14.66788 -14.26478 -13.23313 -12.86257 -12.72170 -12.51693 -12.04373 -11.86394 -11.28191 -11.17957 -10.90343 -10.49153 -10.11192 -9.94305 -9.63123 -8.79406 -8.60823 -7.58115 -7.47413 -6.94190 -4.60599 2.12053 2.26007 2.88421 3.12939 3.24578 3.29730 4.04483 4.28816 4.92632 5.21746 5.73390 5.92456 6.15044 6.15569 6.46983 6.54638 6.66685 6.98845 7.02063 7.11476 7.33713 7.58909 7.78558 8.21911 8.40382 8.69373 10.05361 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.018357 C = 0.011973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.625946 B = 1524.977914 C = 2338.110876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.162 4.162 3 C -0.065 4.065 4 C -0.256 4.256 5 C 0.144 3.856 6 F -0.149 7.149 7 C -0.218 4.218 8 Br -0.062 7.062 9 C 0.130 3.870 10 C -0.468 4.468 11 H 0.103 0.897 12 C 0.119 3.881 13 N -0.788 5.788 14 Si 0.845 3.155 15 H -0.227 1.227 16 H -0.279 1.279 17 H -0.253 1.253 18 H 0.054 0.946 19 H 0.068 0.932 20 H 0.044 0.956 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 4.271 -0.667 4.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.164 4.164 3 C -0.083 4.083 4 C -0.277 4.277 5 C 0.122 3.878 6 F -0.128 7.128 7 C -0.299 4.299 8 Br 0.023 6.977 9 C 0.126 3.874 10 C -0.495 4.495 11 H 0.121 0.879 12 C -0.104 4.104 13 N -0.411 5.411 14 Si 0.667 3.333 15 H -0.150 1.150 16 H -0.205 1.205 17 H -0.176 1.176 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.063 0.937 21 H 0.128 0.872 22 H 0.132 0.868 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.607 3.358 -0.697 4.308 hybrid contribution 0.403 0.443 -0.790 0.991 sum 3.010 3.800 -1.487 5.071 Atomic orbital electron populations 1.20452 0.91840 1.01150 1.00937 1.20119 0.95623 0.92109 1.08589 1.20503 0.92804 0.96991 0.98033 1.20370 0.94544 0.94938 1.17846 1.17313 0.75750 0.93699 1.01006 1.91406 1.29999 1.97451 1.93960 1.22171 0.95299 0.88368 1.24060 1.96364 1.72659 1.30929 1.97772 1.17239 0.88298 0.93796 0.88102 1.19133 1.18404 0.94981 1.17002 0.87917 1.25748 0.91262 0.93637 0.99724 1.69720 1.35809 1.00677 1.34887 0.87399 0.83569 0.80819 0.81511 1.15010 1.20482 1.17615 0.92738 0.91274 0.93717 0.87181 0.86798 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.62 36.01 0.35 -1.25 14 2 C -0.16 -3.50 5.94 -103.91 -0.62 -4.12 14 3 C -0.06 -1.26 9.67 -39.67 -0.38 -1.65 14 4 C -0.26 -5.19 10.03 -39.23 -0.39 -5.58 14 5 C 0.14 3.24 7.26 -39.47 -0.29 2.96 14 6 F -0.15 -3.26 16.72 2.25 0.04 -3.22 14 7 C -0.22 -5.27 5.11 -38.71 -0.20 -5.47 14 8 Br -0.06 -1.45 26.99 -68.01 -1.84 -3.29 14 9 C 0.13 3.17 4.44 -106.81 -0.47 2.69 14 10 C -0.47 -11.95 7.94 -37.76 -0.30 -12.25 14 11 H 0.10 2.72 7.27 -52.49 -0.38 2.34 14 12 C 0.12 3.01 4.00 -17.34 -0.07 2.94 14 13 N -0.79 -20.24 13.93 55.55 0.77 -19.46 14 14 Si 0.84 19.73 24.94 -169.99 -4.24 15.49 14 15 H -0.23 -5.20 5.64 56.52 0.32 -4.88 14 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 14 17 H -0.25 -6.10 7.11 56.52 0.40 -5.70 14 18 H 0.05 0.96 8.14 -51.93 -0.42 0.53 14 19 H 0.07 1.32 6.66 -51.93 -0.35 0.97 14 20 H 0.04 0.69 8.09 -51.93 -0.42 0.27 14 21 H 0.11 1.77 8.06 -52.49 -0.42 1.35 14 22 H 0.11 2.00 8.06 -52.49 -0.42 1.57 14 23 H 0.28 6.75 8.30 -40.82 -0.34 6.41 14 LS Contribution 221.00 15.07 3.33 3.33 Total: -1.00 -25.96 221.00 -5.94 -31.90 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -1.63 Total: -3.01 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.38 Total: -21.73 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.77 Total: -19.46 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.24 Total: 15.49 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -1.84 Total: -3.29 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -25.96 -5.94 -31.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524671.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.248 kcal (2) G-P(sol) polarization free energy of solvation -25.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds