Wall clock time and date at job start Mon Mar 30 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37619 * 120.09479 * 2 1 4 4 C 1.38623 * 120.29957 * 180.02562 * 3 2 1 5 5 C 1.38807 * 120.49187 * 0.27650 * 4 3 2 6 6 F 1.35091 * 119.90742 * 179.72669 * 5 4 3 7 7 C 1.37963 * 120.18393 * 359.48696 * 5 4 3 8 8 Br 1.89104 * 120.15064 * 180.27448 * 7 5 4 9 9 C 1.40714 * 120.09757 * 180.02562 * 2 1 3 10 10 C 1.41348 * 120.24489 * 359.97438 * 9 2 1 11 11 H 1.07999 * 119.99909 * 310.46562 * 10 9 2 12 12 C 1.39935 * 120.00017 * 130.45824 * 10 9 2 13 13 N 1.30838 * 120.00179 * 155.33246 * 12 10 9 14 14 Si 1.86799 * 120.00310 * 335.32640 * 12 10 9 15 15 H 1.48499 * 109.47186 * 95.34118 * 14 12 10 16 16 H 1.48501 * 109.47357 * 215.34573 * 14 12 10 17 17 H 1.48503 * 109.46859 * 335.34582 * 14 12 10 18 18 H 1.09002 * 109.47225 * 89.99749 * 1 2 3 19 19 H 1.09003 * 109.46884 * 209.99899 * 1 2 3 20 20 H 1.09006 * 109.46942 * 329.99760 * 1 2 3 21 21 H 1.07998 * 119.84663 * 0.02562 * 3 2 1 22 22 H 1.07998 * 119.75115 * 179.97438 * 4 3 2 23 23 H 0.96992 * 120.00143 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1907 0.0000 4 6 3.5833 1.1956 -0.0005 5 6 4.2919 0.0021 -0.0068 6 9 5.6427 0.0207 -0.0129 7 6 3.6206 -1.2032 -0.0020 8 35 4.5870 -2.8287 -0.0028 9 6 2.2127 -1.2174 -0.0005 10 6 1.5133 -2.4457 -0.0005 11 1 0.7189 -2.6148 0.7113 12 6 1.8501 -3.4427 -0.9230 13 7 1.5889 -4.6965 -0.6557 14 14 2.6724 -2.9834 -2.5361 15 1 4.1446 -3.1199 -2.3978 16 1 2.1904 -3.8862 -3.6121 17 1 2.3358 -1.5787 -2.8809 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6562 2.1254 0.0004 22 1 4.1159 2.1352 -0.0009 23 1 1.8220 -5.3875 -1.2952 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216524671.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:13 Heat of formation + Delta-G solvation = -43.636903 kcal Electronic energy + Delta-G solvation = -12126.472260 eV Core-core repulsion = 9706.394232 eV Total energy + Delta-G solvation = -2420.078028 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.77749 -39.74329 -35.51249 -33.43227 -32.78492 -30.49062 -27.89631 -26.48596 -23.06140 -21.73990 -19.67588 -18.03885 -17.09329 -16.69783 -16.42840 -15.91345 -15.03379 -14.48849 -14.32421 -14.24209 -13.84121 -13.58325 -13.02403 -12.73110 -12.61095 -12.18886 -11.94055 -11.65324 -11.38805 -10.58988 -10.45203 -9.35994 -9.17926 -8.81362 -6.50053 0.39220 0.52700 1.08211 1.28729 1.37379 1.41533 2.17632 2.52173 3.11303 3.51802 4.17928 4.32814 4.59522 4.60628 4.92334 5.06334 5.15117 5.26079 5.34098 5.52887 5.63274 5.85832 6.09157 6.32313 6.60062 6.82701 8.23651 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.018357 C = 0.011973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.625946 B = 1524.977914 C = 2338.110876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.170 4.170 3 C -0.058 4.058 4 C -0.233 4.233 5 C 0.120 3.880 6 F -0.148 7.148 7 C -0.235 4.235 8 Br -0.068 7.068 9 C 0.111 3.889 10 C -0.494 4.494 11 H 0.078 0.922 12 C 0.100 3.900 13 N -0.825 5.825 14 Si 0.873 3.127 15 H -0.224 1.224 16 H -0.268 1.268 17 H -0.264 1.264 18 H 0.061 0.939 19 H 0.051 0.949 20 H 0.080 0.920 21 H 0.158 0.842 22 H 0.151 0.849 23 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 6.906 -0.984 7.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.172 4.172 3 C -0.076 4.076 4 C -0.253 4.253 5 C 0.099 3.901 6 F -0.127 7.127 7 C -0.316 4.316 8 Br 0.017 6.983 9 C 0.107 3.893 10 C -0.523 4.523 11 H 0.096 0.904 12 C -0.119 4.119 13 N -0.450 5.450 14 Si 0.695 3.305 15 H -0.147 1.147 16 H -0.194 1.194 17 H -0.188 1.188 18 H 0.080 0.920 19 H 0.070 0.930 20 H 0.099 0.901 21 H 0.176 0.824 22 H 0.168 0.832 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.741 5.997 -1.015 6.671 hybrid contribution 0.407 -0.125 -0.622 0.754 sum 3.148 5.871 -1.637 6.860 Atomic orbital electron populations 1.20483 0.89862 1.02134 1.01698 1.20608 0.97404 0.91949 1.07244 1.21015 0.92693 0.98088 0.95806 1.20939 0.95122 0.95409 1.13846 1.17586 0.76125 0.94090 1.02340 1.91407 1.29779 1.97442 1.94044 1.22462 0.95651 0.89042 1.24438 1.96335 1.72528 1.31600 1.97801 1.17473 0.88597 0.94567 0.88702 1.18995 1.18958 0.96413 1.17931 0.90422 1.26056 0.91500 0.93510 1.00845 1.69740 1.38180 1.01208 1.35858 0.86959 0.83307 0.79997 0.80248 1.14697 1.19367 1.18781 0.91990 0.92966 0.90093 0.82430 0.83179 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.62 71.24 0.69 -2.22 14 2 C -0.17 -6.88 5.94 -19.40 -0.12 -6.99 14 3 C -0.06 -1.97 9.67 22.22 0.21 -1.76 14 4 C -0.23 -8.35 10.03 22.50 0.23 -8.12 14 5 C 0.12 5.11 7.26 22.34 0.16 5.27 14 6 F -0.15 -6.13 16.72 44.97 0.75 -5.38 14 7 C -0.24 -11.12 5.11 22.83 0.12 -11.01 14 8 Br -0.07 -3.15 26.99 -20.37 -0.55 -3.70 14 9 C 0.11 5.31 4.44 -21.28 -0.09 5.21 14 10 C -0.49 -25.76 7.94 23.45 0.19 -25.58 14 11 H 0.08 4.31 7.27 -2.91 -0.02 4.29 14 12 C 0.10 5.14 4.00 85.25 0.34 5.48 14 13 N -0.82 -43.51 13.93 21.83 0.30 -43.21 14 14 Si 0.87 40.38 24.94 68.60 1.71 42.09 14 15 H -0.22 -10.12 5.64 99.48 0.56 -9.56 14 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 14 17 H -0.26 -12.50 7.11 99.48 0.71 -11.79 14 18 H 0.06 2.02 8.14 -2.39 -0.02 2.00 14 19 H 0.05 1.96 6.66 -2.39 -0.02 1.94 14 20 H 0.08 2.15 8.09 -2.38 -0.02 2.13 14 21 H 0.16 3.94 8.06 -2.91 -0.02 3.91 14 22 H 0.15 4.32 8.06 -2.91 -0.02 4.30 14 23 H 0.29 14.06 8.30 -92.71 -0.77 13.29 14 Total: -1.00 -55.47 221.00 5.02 -50.45 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 1.08 Total: -0.55 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 1.72 Total: -39.71 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.30 Total: -43.21 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.75 Total: -5.38 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.71 Total: 42.09 kcal Atomic # 35 Polarization: -3.15 SS G_CDS: -0.55 Total: -3.70 kcal Total: -55.47 5.02 -50.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524671.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.815 kcal (2) G-P(sol) polarization free energy of solvation -55.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds