Wall clock time and date at job start Mon Mar 30 2020 06:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36597 * 120.10087 * 2 1 4 4 C 1.38893 * 120.22614 * 180.02562 * 3 2 1 5 5 F 1.35102 * 119.78353 * 180.02562 * 4 3 2 6 6 C 1.39060 * 120.43376 * 0.28550 * 4 3 2 7 7 Br 1.89096 * 119.89788 * 179.69785 * 6 4 3 8 8 C 1.36617 * 120.19794 * 359.43759 * 6 4 3 9 9 C 1.40745 * 120.10667 * 180.02562 * 2 1 3 10 10 C 1.41323 * 120.21029 * 359.97438 * 9 2 1 11 11 H 1.07996 * 120.00039 * 25.45343 * 10 9 2 12 12 C 1.39911 * 119.99735 * 205.46150 * 10 9 2 13 13 N 1.30855 * 120.00627 * 15.32734 * 12 10 9 14 14 Si 1.86800 * 119.99763 * 195.32357 * 12 10 9 15 15 H 1.48496 * 109.47080 * 89.99908 * 14 12 10 16 16 H 1.48496 * 109.47413 * 209.99940 * 14 12 10 17 17 H 1.48500 * 109.47111 * 330.00331 * 14 12 10 18 18 H 1.09004 * 109.47296 * 89.99202 * 1 2 3 19 19 H 1.08999 * 109.47419 * 209.99745 * 1 2 3 20 20 H 1.09004 * 109.47380 * 329.99503 * 1 2 3 21 21 H 1.07996 * 119.89128 * 0.05155 * 3 2 1 22 22 H 1.08000 * 120.11730 * 180.27962 * 8 6 4 23 23 H 0.96992 * 120.00394 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1818 0.0000 4 6 3.5810 1.1848 -0.0005 5 9 4.2495 2.3588 0.0000 6 6 4.2880 -0.0126 -0.0071 7 35 6.1788 0.0092 -0.0163 8 6 3.6206 -1.2047 -0.0014 9 6 2.2130 -1.2176 -0.0005 10 6 1.5131 -2.4454 -0.0005 11 1 0.5119 -2.4962 -0.4021 12 6 2.1174 -3.5949 0.5199 13 7 3.1856 -3.4910 1.2685 14 14 1.3991 -5.2783 0.1461 15 1 2.0164 -5.8159 -1.0928 16 1 1.6787 -6.1982 1.2778 17 1 -0.0689 -5.1591 -0.0438 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5139 21 1 1.6519 2.1170 0.0008 22 1 4.1711 -2.1339 -0.0019 23 1 3.6047 -4.2880 1.6289 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216524743.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:15 Heat of formation + Delta-G solvation = -53.371535 kcal Electronic energy + Delta-G solvation = -11809.684316 eV Core-core repulsion = 9389.184163 eV Total energy + Delta-G solvation = -2420.500153 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.38679 -39.68893 -35.60001 -33.99400 -31.40904 -31.04276 -27.87545 -26.39983 -23.29082 -21.73938 -19.20626 -17.79552 -17.36186 -16.58513 -16.23851 -15.75435 -14.66462 -14.25758 -14.23254 -13.84939 -13.63262 -13.12587 -12.87448 -12.84085 -12.69057 -12.25810 -11.70706 -11.45853 -11.39917 -11.06067 -10.99484 -9.46965 -9.22328 -8.70978 -6.40233 0.52947 0.79286 0.83821 1.42519 1.49198 1.55742 2.19155 2.54200 3.45837 3.78003 4.15560 4.57084 4.74835 4.92776 5.00233 5.05786 5.20035 5.23512 5.48428 5.59087 5.71060 5.98511 6.11982 6.45351 6.80436 6.80891 8.24293 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.009712 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.236294 B = 2882.257594 C = 3892.469234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.174 4.174 3 C -0.108 4.108 4 C -0.043 4.043 5 F -0.159 7.159 6 C -0.099 4.099 7 Br -0.070 7.070 8 C -0.139 4.139 9 C 0.078 3.922 10 C -0.464 4.464 11 H 0.097 0.903 12 C 0.034 3.966 13 N -0.816 5.816 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.251 1.251 18 H 0.065 0.935 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.138 0.862 22 H 0.124 0.876 23 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 1.321 -1.794 2.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.176 4.176 3 C -0.128 4.128 4 C -0.065 4.065 5 F -0.138 7.138 6 C -0.179 4.179 7 Br 0.015 6.985 8 C -0.160 4.160 9 C 0.075 3.925 10 C -0.492 4.492 11 H 0.115 0.885 12 C -0.183 4.183 13 N -0.441 5.441 14 Si 0.805 3.195 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.174 1.174 18 H 0.084 0.916 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.156 0.844 22 H 0.142 0.858 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.878 1.239 -1.641 2.236 hybrid contribution -0.033 -0.447 0.066 0.453 sum 0.844 0.792 -1.575 1.955 Atomic orbital electron populations 1.20466 0.89697 1.02160 1.01638 1.19908 0.97206 0.91565 1.08879 1.20443 0.90707 0.99175 1.02453 1.17151 0.90446 0.79295 1.19612 1.91323 1.80984 1.45874 1.95596 1.21503 0.89016 0.95721 1.11617 1.96413 1.04705 1.99358 1.98063 1.20998 0.95194 0.94920 1.04888 1.17902 0.91191 0.93680 0.89776 1.19930 1.02399 0.92400 1.34504 0.88478 1.26862 0.94415 1.05274 0.91744 1.69841 1.18217 1.33667 1.22333 0.85143 0.80053 0.75541 0.78785 1.18912 1.19645 1.17428 0.91619 0.92002 0.91373 0.84439 0.85800 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 9.40 71.23 0.67 -2.26 14 2 C -0.17 -7.66 5.91 -19.64 -0.12 -7.78 14 3 C -0.11 -4.64 9.60 22.04 0.21 -4.43 14 4 C -0.04 -2.00 7.29 22.62 0.16 -1.84 14 5 F -0.16 -7.07 16.71 44.97 0.75 -6.31 14 6 C -0.10 -4.74 6.19 22.09 0.14 -4.60 14 7 Br -0.07 -2.89 33.26 -20.37 -0.68 -3.57 14 8 C -0.14 -7.05 8.36 22.51 0.19 -6.86 14 9 C 0.08 3.89 5.57 -21.29 -0.12 3.77 14 10 C -0.46 -22.18 8.14 23.43 0.19 -21.99 14 11 H 0.10 4.31 6.85 -2.91 -0.02 4.29 14 12 C 0.03 1.54 5.19 85.24 0.44 1.99 14 13 N -0.82 -39.79 10.87 21.82 0.24 -39.55 14 14 Si 0.98 34.72 29.59 68.60 2.03 36.75 14 15 H -0.26 -9.22 7.11 99.48 0.71 -8.51 14 16 H -0.27 -9.32 7.11 99.48 0.71 -8.61 14 17 H -0.25 -8.42 7.11 99.48 0.71 -7.71 14 18 H 0.07 2.09 8.14 -2.39 -0.02 2.07 14 19 H 0.06 2.23 6.77 -2.39 -0.02 2.22 14 20 H 0.07 2.05 8.08 -2.39 -0.02 2.03 14 21 H 0.14 4.97 8.06 -2.91 -0.02 4.95 14 22 H 0.12 6.56 6.13 -2.91 -0.02 6.54 14 23 H 0.29 12.96 8.30 -92.71 -0.77 12.19 14 Total: -1.00 -52.56 229.72 5.35 -47.22 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.24 Total: 9.45 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 1.77 Total: -43.98 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.24 Total: -39.55 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.75 Total: -6.31 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Atomic # 35 Polarization: -2.89 SS G_CDS: -0.68 Total: -3.57 kcal Total: -52.56 5.35 -47.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216524743.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -52.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds