Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36546 * 119.78781 * 2 1 4 4 C 1.40706 * 119.91069 * 179.72572 * 3 2 1 5 5 C 1.41252 * 120.25239 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00157 * 154.72534 * 5 4 3 7 7 C 1.39930 * 120.00264 * 334.72429 * 5 4 3 8 8 N 1.30852 * 120.00021 * 342.85436 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 162.85061 * 7 5 4 10 10 H 1.48491 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46872 * 120.00361 * 9 7 5 12 12 H 1.48496 * 109.47093 * 239.99797 * 9 7 5 13 13 C 1.41050 * 119.49144 * 0.02562 * 4 3 2 14 14 F 1.35102 * 120.21654 * 180.02562 * 13 4 3 15 15 C 1.37925 * 119.56674 * 359.97438 * 13 4 3 16 16 C 1.38652 * 120.07698 * 0.02562 * 15 13 4 17 17 Br 1.89101 * 119.73742 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47387 * 89.99232 * 1 2 3 19 19 H 1.08998 * 109.47737 * 209.99868 * 1 2 3 20 20 H 1.09005 * 109.46617 * 329.99767 * 1 2 3 21 21 H 1.08001 * 120.04490 * 359.74707 * 3 2 1 22 22 H 0.96993 * 120.00348 * 180.02562 * 8 7 5 23 23 H 1.07996 * 119.95687 * 180.02562 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.1850 0.0000 4 6 3.5923 1.1881 0.0058 5 6 4.3013 2.4097 0.0064 6 1 5.3022 2.4531 0.4098 7 6 3.7070 3.5640 -0.5157 8 7 2.6605 3.4657 -1.2951 9 14 4.4075 5.2450 -0.1000 10 1 5.5832 5.0844 0.7927 11 1 4.8252 5.9299 -1.3496 12 1 3.3711 6.0570 0.5868 13 6 4.2893 -0.0382 0.0111 14 9 5.6403 -0.0524 0.0173 15 6 3.5827 -1.2227 0.0110 16 6 2.1963 -1.2047 0.0052 17 35 1.2371 -2.8344 0.0058 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6426 2.1188 -0.0041 22 1 2.2487 4.2657 -1.6573 23 1 4.1100 -2.1652 0.0154 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216525025.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = -44.459111 kcal Electronic energy + Delta-G solvation = -11805.436137 eV Core-core repulsion = 9385.322456 eV Total energy + Delta-G solvation = -2420.113681 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.34791 -37.78982 -34.19295 -31.49738 -30.74674 -28.84071 -25.87326 -24.82854 -21.47311 -20.03980 -17.35260 -16.04548 -15.52861 -14.80939 -14.16551 -14.03662 -12.95614 -12.87278 -12.70202 -12.41243 -11.77294 -11.60775 -11.24354 -11.07196 -10.99262 -10.67899 -10.12232 -9.78820 -9.71734 -9.30635 -9.19904 -7.67670 -7.39730 -7.03049 -4.63980 2.34970 2.61936 2.76636 2.94924 2.96515 3.02236 3.74889 4.26797 5.22166 5.76342 5.84703 6.03330 6.15522 6.34520 6.56095 6.70095 6.88941 6.91677 7.11733 7.33112 7.61432 7.77747 7.85897 8.29366 8.49137 8.58845 9.87471 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.007308 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.801499 B = 3830.426741 C = 4412.233831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.145 4.145 4 C 0.097 3.903 5 C -0.440 4.440 6 H 0.088 0.912 7 C 0.074 3.926 8 N -0.776 5.776 9 Si 0.916 3.084 10 H -0.257 1.257 11 H -0.271 1.271 12 H -0.268 1.268 13 C -0.032 4.032 14 F -0.159 7.159 15 C -0.086 4.086 16 C -0.188 4.188 17 Br -0.106 7.106 18 H 0.061 0.939 19 H 0.063 0.937 20 H 0.057 0.943 21 H 0.132 0.868 22 H 0.287 0.713 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -4.334 1.571 6.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.049 4.049 3 C -0.166 4.166 4 C 0.093 3.907 5 C -0.467 4.467 6 H 0.106 0.894 7 C -0.146 4.146 8 N -0.400 5.400 9 Si 0.740 3.260 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.193 1.193 13 C -0.053 4.053 14 F -0.138 7.138 15 C -0.107 4.107 16 C -0.268 4.268 17 Br -0.022 7.022 18 H 0.080 0.920 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.150 0.850 22 H 0.098 0.902 23 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.309 -4.784 1.418 6.593 hybrid contribution 0.756 1.065 -0.005 1.306 sum -3.552 -3.720 1.413 5.334 Atomic orbital electron populations 1.20820 0.92612 1.01760 1.01591 1.19107 0.94849 0.91880 0.99105 1.20749 0.93159 0.96243 1.06404 1.17714 0.92553 0.91118 0.89291 1.19685 1.01942 0.92071 1.33050 0.89393 1.26020 0.94167 1.02040 0.92393 1.69812 1.17543 1.32309 1.20287 0.86107 0.80246 0.80097 0.79572 1.18026 1.19600 1.19315 1.17637 0.76097 0.93894 1.17666 1.91289 1.29850 1.97353 1.95315 1.20333 0.92466 0.96310 1.01561 1.20426 0.92525 0.88359 1.25473 1.96317 1.76062 1.31232 1.98561 0.91981 0.91853 0.92391 0.85003 0.90211 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.53 36.00 0.34 -1.71 14 2 C -0.05 -1.05 5.84 -105.03 -0.61 -1.67 14 3 C -0.15 -3.57 8.26 -39.26 -0.32 -3.89 14 4 C 0.10 2.52 5.57 -106.75 -0.59 1.93 14 5 C -0.44 -11.29 8.78 -37.80 -0.33 -11.62 14 6 H 0.09 2.23 7.75 -52.49 -0.41 1.82 14 7 C 0.07 1.76 5.15 -17.34 -0.09 1.67 14 8 N -0.78 -18.69 10.97 55.55 0.61 -18.08 14 9 Si 0.92 17.62 29.59 -169.99 -5.03 12.59 14 10 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 11 H -0.27 -5.13 7.11 56.52 0.40 -4.72 14 12 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 13 C -0.03 -0.80 7.31 -38.63 -0.28 -1.08 14 14 F -0.16 -3.95 16.73 2.25 0.04 -3.92 14 15 C -0.09 -1.97 9.75 -39.54 -0.39 -2.35 14 16 C -0.19 -4.14 6.24 -39.22 -0.24 -4.39 14 17 Br -0.11 -1.92 31.73 -68.01 -2.16 -4.08 14 18 H 0.06 1.10 8.14 -51.93 -0.42 0.67 14 19 H 0.06 1.09 6.60 -51.93 -0.34 0.74 14 20 H 0.06 1.00 8.08 -51.93 -0.42 0.58 14 21 H 0.13 3.26 6.19 -52.49 -0.32 2.94 14 22 H 0.29 6.18 8.30 -40.82 -0.34 5.84 14 23 H 0.11 2.29 8.06 -52.49 -0.42 1.87 14 LS Contribution 229.87 15.07 3.46 3.46 Total: -1.00 -25.49 229.87 -7.07 -32.56 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -1.47 Total: 0.58 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.52 Total: -23.11 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.61 Total: -18.08 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -2.16 Total: -4.08 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -25.49 -7.07 -32.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216525025.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.896 kcal (2) G-P(sol) polarization free energy of solvation -25.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds