Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36546 * 119.78781 * 2 1 4 4 C 1.40706 * 119.91069 * 179.72572 * 3 2 1 5 5 C 1.41252 * 120.25239 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00157 * 154.72534 * 5 4 3 7 7 C 1.39930 * 120.00264 * 334.72429 * 5 4 3 8 8 N 1.30852 * 120.00021 * 342.85436 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 162.85061 * 7 5 4 10 10 H 1.48491 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46872 * 120.00361 * 9 7 5 12 12 H 1.48496 * 109.47093 * 239.99797 * 9 7 5 13 13 C 1.41050 * 119.49144 * 0.02562 * 4 3 2 14 14 F 1.35102 * 120.21654 * 180.02562 * 13 4 3 15 15 C 1.37925 * 119.56674 * 359.97438 * 13 4 3 16 16 C 1.38652 * 120.07698 * 0.02562 * 15 13 4 17 17 Br 1.89101 * 119.73742 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47387 * 89.99232 * 1 2 3 19 19 H 1.08998 * 109.47737 * 209.99868 * 1 2 3 20 20 H 1.09005 * 109.46617 * 329.99767 * 1 2 3 21 21 H 1.08001 * 120.04490 * 359.74707 * 3 2 1 22 22 H 0.96993 * 120.00348 * 180.02562 * 8 7 5 23 23 H 1.07996 * 119.95687 * 180.02562 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.1850 0.0000 4 6 3.5923 1.1881 0.0058 5 6 4.3013 2.4097 0.0064 6 1 5.3022 2.4531 0.4098 7 6 3.7070 3.5640 -0.5157 8 7 2.6605 3.4657 -1.2951 9 14 4.4075 5.2450 -0.1000 10 1 5.5832 5.0844 0.7927 11 1 4.8252 5.9299 -1.3496 12 1 3.3711 6.0570 0.5868 13 6 4.2893 -0.0382 0.0111 14 9 5.6403 -0.0524 0.0173 15 6 3.5827 -1.2227 0.0110 16 6 2.1963 -1.2047 0.0052 17 35 1.2371 -2.8344 0.0058 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6426 2.1188 -0.0041 22 1 2.2487 4.2657 -1.6573 23 1 4.1100 -2.1652 0.0154 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216525025.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = -56.507660 kcal Electronic energy + Delta-G solvation = -11805.958602 eV Core-core repulsion = 9385.322456 eV Total energy + Delta-G solvation = -2420.636146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.27556 -39.58803 -35.98817 -33.23600 -32.48329 -30.58994 -27.59911 -26.60735 -23.29787 -21.84385 -19.20414 -17.90844 -17.33544 -16.55868 -16.08528 -15.73916 -14.61029 -14.53950 -14.44811 -14.17237 -13.47446 -13.37713 -12.84389 -12.69366 -12.62121 -12.24259 -11.89456 -11.53155 -11.47409 -10.97487 -10.81263 -9.49629 -9.21090 -8.80369 -6.54150 0.56621 0.75938 1.04552 1.37186 1.43171 1.53047 2.15417 2.48010 3.35063 3.95990 4.12193 4.31178 4.58698 4.83468 4.89485 5.05827 5.08585 5.16934 5.29597 5.52817 5.78186 5.91665 6.02276 6.41313 6.63563 6.71716 8.13625 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.007308 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.801499 B = 3830.426741 C = 4412.233831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.049 4.049 3 C -0.162 4.162 4 C 0.071 3.929 5 C -0.477 4.477 6 H 0.077 0.923 7 C 0.040 3.960 8 N -0.801 5.801 9 Si 0.988 3.012 10 H -0.262 1.262 11 H -0.262 1.262 12 H -0.255 1.255 13 C -0.065 4.065 14 F -0.165 7.165 15 C -0.084 4.084 16 C -0.195 4.195 17 Br -0.062 7.062 18 H 0.073 0.927 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.125 0.875 22 H 0.298 0.702 23 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -4.422 1.632 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.051 4.051 3 C -0.182 4.182 4 C 0.067 3.933 5 C -0.505 4.505 6 H 0.095 0.905 7 C -0.178 4.178 8 N -0.425 5.425 9 Si 0.808 3.192 10 H -0.185 1.185 11 H -0.186 1.186 12 H -0.179 1.179 13 C -0.086 4.086 14 F -0.145 7.145 15 C -0.105 4.105 16 C -0.275 4.275 17 Br 0.023 6.977 18 H 0.091 0.909 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.142 0.858 22 H 0.109 0.891 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.417 -4.900 1.474 7.451 hybrid contribution 1.013 0.933 -0.042 1.378 sum -4.404 -3.967 1.431 6.097 Atomic orbital electron populations 1.20855 0.89738 1.03106 1.02657 1.19532 0.97007 0.91307 0.97286 1.20761 0.92733 0.96962 1.07767 1.18073 0.93590 0.91728 0.89920 1.19849 1.02090 0.93492 1.35062 0.90531 1.26808 0.94360 1.05105 0.91554 1.69815 1.18283 1.33972 1.20385 0.85058 0.79484 0.75227 0.79462 1.18525 1.18626 1.17893 1.17938 0.76137 0.94781 1.19715 1.91253 1.30248 1.97424 1.95547 1.20578 0.93130 0.96277 1.00512 1.20763 0.92687 0.90416 1.23622 1.96337 1.74886 1.28071 1.98447 0.90879 0.90305 0.91288 0.85750 0.89057 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.70 9.53 71.23 0.68 -3.02 14 2 C -0.05 -2.15 5.84 -20.13 -0.12 -2.26 14 3 C -0.16 -8.03 8.26 22.48 0.19 -7.84 14 4 C 0.07 3.76 5.57 -21.25 -0.12 3.65 14 5 C -0.48 -25.30 8.78 23.42 0.21 -25.09 14 6 H 0.08 4.07 7.75 -2.91 -0.02 4.04 14 7 C 0.04 1.91 5.15 85.25 0.44 2.35 14 8 N -0.80 -38.73 10.97 21.83 0.24 -38.49 14 9 Si 0.99 35.97 29.59 68.60 2.03 38.00 14 10 H -0.26 -9.61 7.11 99.48 0.71 -8.90 14 11 H -0.26 -9.09 7.11 99.48 0.71 -8.38 14 12 H -0.25 -8.67 7.11 99.48 0.71 -7.97 14 13 C -0.06 -3.33 7.31 22.89 0.17 -3.16 14 14 F -0.17 -8.48 16.73 44.97 0.75 -7.72 14 15 C -0.08 -3.82 9.75 22.29 0.22 -3.60 14 16 C -0.20 -8.30 6.24 22.50 0.14 -8.16 14 17 Br -0.06 -2.07 31.73 -20.37 -0.65 -2.71 14 18 H 0.07 2.39 8.14 -2.39 -0.02 2.37 14 19 H 0.08 2.46 6.60 -2.39 -0.02 2.44 14 20 H 0.07 2.23 8.08 -2.38 -0.02 2.21 14 21 H 0.12 6.24 6.19 -2.91 -0.02 6.23 14 22 H 0.30 12.71 8.30 -92.71 -0.77 11.94 14 23 H 0.13 5.20 8.06 -2.91 -0.02 5.17 14 Total: -1.00 -54.31 229.87 5.41 -48.91 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.23 Total: 9.17 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 1.80 Total: -47.15 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.24 Total: -38.49 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.75 Total: -7.72 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 35 Polarization: -2.07 SS G_CDS: -0.65 Total: -2.71 kcal Total: -54.31 5.41 -48.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216525025.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.600 kcal (2) G-P(sol) polarization free energy of solvation -54.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds