Wall clock time and date at job start Mon Mar 30 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38358 * 119.99695 * 2 1 4 4 Cl 1.73605 * 120.00437 * 359.97438 * 3 2 1 5 5 C 1.38327 * 119.99198 * 180.25171 * 3 2 1 6 6 C 1.38336 * 119.97241 * 359.75104 * 5 3 2 7 7 Cl 1.73600 * 120.00793 * 180.02562 * 6 5 3 8 8 C 1.38362 * 119.98390 * 359.97438 * 6 5 3 9 9 C 1.50701 * 119.99302 * 180.02562 * 8 6 5 10 10 C 1.38215 * 120.01194 * 359.97438 * 8 6 5 11 11 C 1.50702 * 119.98411 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.47549 * 89.99694 * 11 10 8 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 0.27447 * 14 12 11 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 H 1.09005 * 109.47085 * 270.27157 * 1 2 3 21 21 H 1.08993 * 109.47644 * 30.27275 * 1 2 3 22 22 H 1.09005 * 109.47061 * 150.27779 * 1 2 3 23 23 H 1.08002 * 120.01755 * 179.72043 * 5 3 2 24 24 H 1.08996 * 109.46790 * 269.98201 * 9 8 6 25 25 H 1.09002 * 109.47045 * 29.97300 * 9 8 6 26 26 H 1.08999 * 109.47434 * 149.97795 * 9 8 6 27 27 H 1.08996 * 109.47077 * 329.99368 * 11 10 8 28 28 H 1.09004 * 109.46818 * 210.00202 * 11 10 8 29 29 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1983 0.0000 4 17 1.3307 2.7017 -0.0007 5 6 3.5819 1.1981 -0.0053 6 6 4.2729 -0.0003 -0.0053 7 17 6.0089 -0.0015 -0.0112 8 6 3.5801 -1.1979 0.0004 9 6 4.3327 -2.5036 0.0010 10 6 2.1980 -1.1971 0.0068 11 6 1.4440 -2.5019 0.0136 12 6 1.1992 -2.9333 1.4366 13 1 1.5538 -2.3233 2.2543 14 6 0.5227 -4.1067 1.6946 15 7 0.3086 -4.4828 2.9365 16 14 -0.0838 -5.1655 0.2803 17 1 -1.4602 -4.7516 -0.0932 18 1 0.8180 -4.9957 -0.8873 19 1 -0.0914 -6.5909 0.6968 20 1 -0.3633 0.0049 1.0277 21 1 -0.3634 0.8874 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 4.1223 2.1332 -0.0098 24 1 4.5099 -2.8211 -1.0266 25 1 5.2874 -2.3725 0.5104 26 1 3.7453 -3.2614 0.5193 27 1 2.0304 -3.2630 -0.5010 28 1 0.4893 -2.3725 -0.4963 29 1 -0.1677 -5.3081 3.1181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216527191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:43 Heat of formation + Delta-G solvation = -9.943324 kcal Electronic energy + Delta-G solvation = -14894.234357 eV Core-core repulsion = 12254.214548 eV Total energy + Delta-G solvation = -2640.019809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.56136 -36.55674 -36.19609 -33.67961 -32.84320 -31.94385 -28.70382 -26.49683 -26.18319 -23.14009 -20.41737 -20.22568 -16.92086 -16.37363 -16.24669 -14.54912 -14.33293 -13.96615 -13.62842 -13.03899 -12.96859 -12.58486 -12.44422 -12.32656 -12.05083 -11.74224 -11.33575 -11.20868 -11.14113 -10.88115 -10.55944 -10.49609 -10.35506 -10.06876 -10.03795 -9.45933 -8.66514 -8.05996 -8.04270 -6.16045 -4.16350 1.39669 1.56413 2.11613 2.60385 3.21419 3.30696 3.31449 3.85405 4.32697 5.04128 5.15313 5.23587 5.25449 5.52215 5.71339 5.96480 5.99505 6.10676 6.14070 6.21043 6.29095 6.51378 6.60436 6.69096 6.76827 6.87378 7.16918 7.29646 7.56633 8.38583 8.88754 9.43038 10.96498 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.008018 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.155560 B = 3491.443305 C = 4601.139363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.033 4.033 4 Cl -0.075 7.075 5 C -0.120 4.120 6 C -0.033 4.033 7 Cl -0.075 7.075 8 C -0.065 4.065 9 C -0.122 4.122 10 C -0.012 4.012 11 C 0.014 3.986 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.264 1.264 19 H -0.286 1.286 20 H 0.081 0.919 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.133 0.867 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 9.093 -7.666 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.059 4.059 4 Cl -0.047 7.047 5 C -0.139 4.139 6 C -0.060 4.060 7 Cl -0.047 7.047 8 C -0.066 4.066 9 C -0.178 4.178 10 C -0.012 4.012 11 C -0.023 4.023 12 C -0.550 4.550 13 H 0.093 0.907 14 C -0.128 4.128 15 N -0.533 5.533 16 Si 0.699 3.301 17 H -0.200 1.200 18 H -0.188 1.188 19 H -0.211 1.211 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.151 0.849 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.230 9.078 -7.547 12.912 hybrid contribution -0.217 -0.342 -0.504 0.646 sum 5.013 8.736 -8.051 12.895 Atomic orbital electron populations 1.20869 0.90084 1.02638 1.03513 1.19725 0.97251 0.90501 0.99309 1.20484 0.91362 0.86460 1.07633 1.98322 1.76921 1.32333 1.97081 1.20554 0.91966 0.97299 1.04126 1.20504 0.83754 0.94100 1.07625 1.98321 1.10459 1.98801 1.97079 1.19726 0.93461 0.94241 0.99198 1.20934 1.00000 0.94659 1.02249 1.19943 0.91818 0.96024 0.93453 1.18932 0.94983 0.89120 0.99234 1.20784 1.37024 1.07292 0.89900 0.90747 1.24949 0.95317 0.97205 0.95362 1.69888 1.41245 1.23639 1.18518 0.86897 0.79867 0.80100 0.83263 1.20050 1.18818 1.21148 0.90075 0.91983 0.90274 0.84863 0.91443 0.91551 0.88612 0.94701 0.94970 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.20 36.00 0.33 -1.61 15 2 C -0.07 -1.23 5.88 -104.59 -0.62 -1.84 15 3 C -0.03 -0.54 6.31 -39.50 -0.25 -0.79 15 4 Cl -0.08 -1.08 27.30 -51.86 -1.42 -2.50 15 5 C -0.12 -1.90 9.62 -39.51 -0.38 -2.28 15 6 C -0.03 -0.55 6.31 -39.50 -0.25 -0.80 15 7 Cl -0.08 -1.08 27.30 -51.86 -1.42 -2.50 15 8 C -0.07 -1.20 5.88 -104.58 -0.62 -1.82 15 9 C -0.12 -2.08 8.80 36.01 0.32 -1.76 15 10 C -0.01 -0.23 5.07 -104.64 -0.53 -0.76 15 11 C 0.01 0.31 3.09 -29.04 -0.09 0.22 15 12 C -0.51 -13.45 9.24 -34.44 -0.32 -13.77 15 13 H 0.07 2.18 7.98 -52.49 -0.42 1.77 15 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 15 N -0.89 -26.16 13.96 55.43 0.77 -25.38 15 16 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 15 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.26 -5.77 6.53 56.52 0.37 -5.40 15 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 20 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 21 H 0.06 0.90 6.91 -51.93 -0.36 0.55 15 22 H 0.08 1.35 5.94 -51.93 -0.31 1.05 15 23 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.07 1.04 6.90 -51.93 -0.36 0.68 15 26 H 0.10 1.84 6.36 -51.93 -0.33 1.51 15 27 H 0.03 0.76 5.74 -51.93 -0.30 0.46 15 28 H 0.03 0.69 5.37 -51.93 -0.28 0.41 15 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 269.51 15.07 4.06 4.06 Total: -1.00 -27.33 269.51 -7.95 -35.29 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -2.79 Total: -1.12 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -2.50 Total: -23.29 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -2.83 Total: -5.00 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.33 -7.95 -35.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216527191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.342 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds