Wall clock time and date at job start Mon Mar 30 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38358 * 119.99695 * 2 1 4 4 Cl 1.73605 * 120.00437 * 359.97438 * 3 2 1 5 5 C 1.38327 * 119.99198 * 180.25171 * 3 2 1 6 6 C 1.38336 * 119.97241 * 359.75104 * 5 3 2 7 7 Cl 1.73600 * 120.00793 * 180.02562 * 6 5 3 8 8 C 1.38362 * 119.98390 * 359.97438 * 6 5 3 9 9 C 1.50701 * 119.99302 * 180.02562 * 8 6 5 10 10 C 1.38215 * 120.01194 * 359.97438 * 8 6 5 11 11 C 1.50702 * 119.98411 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.47549 * 89.99694 * 11 10 8 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 0.27447 * 14 12 11 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 H 1.09005 * 109.47085 * 270.27157 * 1 2 3 21 21 H 1.08993 * 109.47644 * 30.27275 * 1 2 3 22 22 H 1.09005 * 109.47061 * 150.27779 * 1 2 3 23 23 H 1.08002 * 120.01755 * 179.72043 * 5 3 2 24 24 H 1.08996 * 109.46790 * 269.98201 * 9 8 6 25 25 H 1.09002 * 109.47045 * 29.97300 * 9 8 6 26 26 H 1.08999 * 109.47434 * 149.97795 * 9 8 6 27 27 H 1.08996 * 109.47077 * 329.99368 * 11 10 8 28 28 H 1.09004 * 109.46818 * 210.00202 * 11 10 8 29 29 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1983 0.0000 4 17 1.3307 2.7017 -0.0007 5 6 3.5819 1.1981 -0.0053 6 6 4.2729 -0.0003 -0.0053 7 17 6.0089 -0.0015 -0.0112 8 6 3.5801 -1.1979 0.0004 9 6 4.3327 -2.5036 0.0010 10 6 2.1980 -1.1971 0.0068 11 6 1.4440 -2.5019 0.0136 12 6 1.1992 -2.9333 1.4366 13 1 1.5538 -2.3233 2.2543 14 6 0.5227 -4.1067 1.6946 15 7 0.3086 -4.4828 2.9365 16 14 -0.0838 -5.1655 0.2803 17 1 -1.4602 -4.7516 -0.0932 18 1 0.8180 -4.9957 -0.8873 19 1 -0.0914 -6.5909 0.6968 20 1 -0.3633 0.0049 1.0277 21 1 -0.3634 0.8874 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 4.1223 2.1332 -0.0098 24 1 4.5099 -2.8211 -1.0266 25 1 5.2874 -2.3725 0.5104 26 1 3.7453 -3.2614 0.5193 27 1 2.0304 -3.2630 -0.5010 28 1 0.4893 -2.3725 -0.4963 29 1 -0.1677 -5.3081 3.1181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216527191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:43 Heat of formation + Delta-G solvation = -23.194914 kcal Electronic energy + Delta-G solvation = -14894.808989 eV Core-core repulsion = 12254.214548 eV Total energy + Delta-G solvation = -2640.594441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.93060 -37.78681 -37.46159 -35.41890 -34.19274 -33.69992 -30.37263 -28.00167 -27.50968 -24.91074 -21.77688 -21.74811 -18.96419 -17.73041 -17.63137 -16.31129 -15.75892 -15.43722 -14.90089 -14.81851 -14.27894 -14.07434 -14.01624 -13.86921 -13.37056 -12.98160 -12.94245 -12.84035 -12.54588 -12.23908 -12.07935 -12.00643 -11.71936 -11.66530 -11.53661 -11.39351 -10.73416 -9.48810 -9.37318 -8.25389 -6.29819 0.04268 0.19785 0.84994 1.32971 1.39825 1.42039 1.52109 2.38027 2.46902 3.09578 3.73517 3.87889 3.91521 4.15453 4.31402 4.60880 4.69517 4.73606 4.78385 4.80771 4.94141 5.03885 5.09340 5.21645 5.31481 5.35218 5.55978 5.74874 5.76804 6.29101 6.75518 7.32923 8.90935 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.008018 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.155560 B = 3491.443305 C = 4601.139363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.037 4.037 4 Cl -0.053 7.053 5 C -0.110 4.110 6 C -0.037 4.037 7 Cl -0.053 7.053 8 C -0.078 4.078 9 C -0.118 4.118 10 C -0.042 4.042 11 C 0.022 3.978 12 C -0.505 4.505 13 H 0.027 0.973 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.938 3.062 17 H -0.265 1.265 18 H -0.241 1.241 19 H -0.288 1.288 20 H 0.066 0.934 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.160 0.840 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 10.113 -9.655 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.064 4.064 4 Cl -0.024 7.024 5 C -0.129 4.129 6 C -0.064 4.064 7 Cl -0.024 7.024 8 C -0.079 4.079 9 C -0.175 4.175 10 C -0.042 4.042 11 C -0.015 4.015 12 C -0.543 4.543 13 H 0.045 0.955 14 C -0.182 4.182 15 N -0.588 5.588 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.164 1.164 19 H -0.214 1.214 20 H 0.085 0.915 21 H 0.103 0.897 22 H 0.093 0.907 23 H 0.177 0.823 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.856 10.119 -9.554 15.099 hybrid contribution -0.317 -0.511 0.176 0.627 sum 5.539 9.608 -9.378 14.523 Atomic orbital electron populations 1.20853 0.89595 1.03558 1.02837 1.19879 0.97843 0.90839 0.99432 1.20553 0.91887 0.86905 1.07016 1.98328 1.76546 1.30591 1.96939 1.20875 0.91805 0.98084 1.02185 1.20561 0.85052 0.93750 1.07033 1.98328 1.08386 1.98755 1.96935 1.19887 0.93221 0.95442 0.99310 1.20901 0.99800 0.93478 1.03291 1.19828 0.92633 0.95591 0.96195 1.18749 0.95851 0.90661 0.96262 1.20913 1.35829 1.06432 0.91128 0.95464 1.25835 0.95669 0.98752 0.97961 1.70051 1.43066 1.24532 1.21156 0.85831 0.79967 0.77670 0.80355 1.19028 1.16435 1.21362 0.91491 0.89669 0.90735 0.82277 0.89394 0.90420 0.91399 0.94147 0.94093 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.72 9.20 71.23 0.66 -3.06 15 2 C -0.08 -2.83 5.88 -19.84 -0.12 -2.94 15 3 C -0.04 -1.15 6.31 22.32 0.14 -1.01 15 4 Cl -0.05 -1.39 27.30 -2.72 -0.07 -1.47 15 5 C -0.11 -3.22 9.62 22.31 0.21 -3.00 15 6 C -0.04 -1.16 6.31 22.32 0.14 -1.02 15 7 Cl -0.05 -1.39 27.30 -2.72 -0.07 -1.47 15 8 C -0.08 -2.78 5.88 -19.84 -0.12 -2.90 15 9 C -0.12 -3.93 8.80 71.24 0.63 -3.30 15 10 C -0.04 -1.65 5.07 -19.87 -0.10 -1.75 15 11 C 0.02 0.95 3.09 29.10 0.09 1.04 15 12 C -0.51 -27.32 9.24 25.60 0.24 -27.08 15 13 H 0.03 1.68 7.98 -2.91 -0.02 1.66 15 14 C 0.02 0.84 5.47 84.66 0.46 1.30 15 15 N -0.95 -57.30 13.96 21.45 0.30 -57.00 15 16 Si 0.94 41.40 27.47 68.60 1.88 43.28 15 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 18 H -0.24 -9.67 6.53 99.48 0.65 -9.02 15 19 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 20 H 0.07 2.38 8.14 -2.38 -0.02 2.37 15 21 H 0.08 2.35 6.91 -2.39 -0.02 2.33 15 22 H 0.07 2.50 5.94 -2.38 -0.01 2.49 15 23 H 0.16 3.76 8.06 -2.91 -0.02 3.74 15 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.08 2.34 6.90 -2.39 -0.02 2.32 15 26 H 0.07 2.63 6.36 -2.39 -0.02 2.61 15 27 H 0.04 1.71 5.74 -2.39 -0.01 1.70 15 28 H 0.04 1.72 5.37 -2.39 -0.01 1.70 15 29 H 0.27 15.08 8.31 -92.70 -0.77 14.31 15 Total: -1.00 -59.63 269.51 5.39 -54.24 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.12 Total: 6.14 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.23 Total: -43.72 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.30 Total: -57.00 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.28 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.15 Total: -2.94 kcal Total: -59.63 5.39 -54.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216527191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.045 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds