Wall clock time and date at job start Mon Mar 30 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36548 * 120.04636 * 2 1 4 4 C 1.38804 * 120.44066 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.74329 * 180.02562 * 4 3 2 6 6 C 1.38655 * 120.51116 * 0.02562 * 4 3 2 7 7 C 1.37922 * 120.08655 * 359.97438 * 6 4 3 8 8 F 1.35096 * 120.22327 * 180.02562 * 7 6 4 9 9 C 1.40701 * 120.05008 * 180.02562 * 2 1 3 10 10 C 1.41260 * 120.25015 * 0.02562 * 9 2 1 11 11 H 1.07995 * 120.00120 * 36.60500 * 10 9 2 12 12 C 1.39936 * 119.99640 * 216.60648 * 10 9 2 13 13 N 1.30851 * 119.99860 * 19.70135 * 12 10 9 14 14 Si 1.86797 * 119.99824 * 199.70287 * 12 10 9 15 15 H 1.48506 * 109.47128 * 59.99834 * 14 12 10 16 16 H 1.48495 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47228 * 300.00077 * 14 12 10 18 18 H 1.09009 * 109.47138 * 89.99865 * 1 2 3 19 19 H 1.08997 * 109.47148 * 209.99733 * 1 2 3 20 20 H 1.09002 * 109.47167 * 329.99862 * 1 2 3 21 21 H 1.08000 * 119.77865 * 359.74775 * 3 2 1 22 22 H 1.08001 * 119.95197 * 179.97438 * 6 4 3 23 23 H 0.97006 * 119.99595 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1820 0.0000 4 6 3.5787 1.1915 -0.0005 5 35 4.5055 2.8398 0.0002 6 6 4.2908 0.0019 -0.0016 7 6 3.6220 -1.2043 -0.0016 8 9 4.3131 -2.3651 -0.0022 9 6 2.2115 -1.2179 -0.0005 10 6 1.5116 -2.4449 -0.0016 11 1 0.5922 -2.5416 -0.5597 12 6 2.0098 -3.5351 0.7205 13 7 2.8743 -3.3419 1.6836 14 14 1.4407 -5.2662 0.3096 15 1 1.7885 -5.5802 -1.0996 16 1 2.1121 -6.2354 1.2123 17 1 -0.0305 -5.3592 0.4888 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6478 2.1156 -0.0041 22 1 5.3707 0.0198 -0.0024 23 1 3.2193 -4.0976 2.1844 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219847232.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:25 Heat of formation + Delta-G solvation = -37.865596 kcal Electronic energy + Delta-G solvation = -11974.855908 eV Core-core repulsion = 9555.028143 eV Total energy + Delta-G solvation = -2419.827765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.07722 -37.76274 -33.88735 -31.90128 -30.22978 -28.79655 -26.33500 -24.68020 -21.08711 -20.04517 -17.52998 -15.72121 -15.32680 -14.84701 -14.37679 -13.89676 -12.93551 -12.60614 -12.46570 -12.06470 -11.74082 -11.49788 -11.28683 -11.08909 -11.05077 -10.75515 -10.25371 -9.59913 -9.55435 -9.45371 -9.07287 -7.57260 -7.30722 -6.95818 -4.60138 2.38735 2.59727 2.71896 3.00405 3.02679 3.07383 3.84238 4.37892 5.16363 5.80150 5.91437 6.11342 6.33695 6.45607 6.51375 6.73565 6.85964 6.99174 7.17492 7.34758 7.45860 7.66710 7.96339 8.21444 8.57048 8.65475 10.02108 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.046295 B = 0.007235 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.675825 B = 3869.139494 C = 4344.984565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.164 4.164 3 C -0.068 4.068 4 C -0.179 4.179 5 Br -0.107 7.107 6 C -0.106 4.106 7 C 0.039 3.961 8 F -0.139 7.139 9 C 0.098 3.902 10 C -0.455 4.455 11 H 0.090 0.910 12 C 0.077 3.923 13 N -0.767 5.767 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.264 1.264 18 H 0.047 0.953 19 H 0.067 0.933 20 H 0.043 0.957 21 H 0.104 0.896 22 H 0.109 0.891 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 5.484 -1.815 5.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.259 4.259 5 Br -0.023 7.023 6 C -0.127 4.127 7 C 0.017 3.983 8 F -0.118 7.118 9 C 0.094 3.906 10 C -0.482 4.482 11 H 0.108 0.892 12 C -0.146 4.146 13 N -0.389 5.389 14 Si 0.736 3.264 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.189 1.189 18 H 0.066 0.934 19 H 0.086 0.914 20 H 0.063 0.937 21 H 0.122 0.878 22 H 0.127 0.873 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.627 5.919 -1.607 6.165 hybrid contribution -0.079 -1.331 0.002 1.333 sum 0.548 4.588 -1.605 4.891 Atomic orbital electron populations 1.20424 0.92200 1.01316 1.00247 1.19339 0.95054 0.91679 1.10594 1.20114 0.91527 0.97173 1.00027 1.20461 0.93446 0.88106 1.23845 1.96367 1.77647 1.29677 1.98605 1.20435 0.98459 0.90710 1.03122 1.17618 0.89921 0.80014 1.10706 1.91338 1.79026 1.47345 1.94087 1.17525 0.89812 0.93307 0.89952 1.19432 1.08534 0.94114 1.26137 0.89241 1.25896 0.93686 1.01675 0.93294 1.69759 1.21697 1.34674 1.12801 0.86279 0.79669 0.80565 0.79870 1.18620 1.20186 1.18863 0.93392 0.91401 0.93748 0.87797 0.87270 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.44 36.00 0.34 -1.29 14 2 C -0.16 -3.74 5.90 -104.31 -0.62 -4.36 14 3 C -0.07 -1.47 9.34 -39.98 -0.37 -1.85 14 4 C -0.18 -3.91 6.24 -39.22 -0.24 -4.16 14 5 Br -0.11 -1.95 33.68 -68.01 -2.29 -4.24 14 6 C -0.11 -2.48 9.75 -39.54 -0.39 -2.87 14 7 C 0.04 1.00 6.69 -38.63 -0.26 0.74 14 8 F -0.14 -3.71 14.27 2.25 0.03 -3.68 14 9 C 0.10 2.49 5.40 -106.75 -0.58 1.91 14 10 C -0.45 -11.42 7.71 -37.80 -0.29 -11.72 14 11 H 0.09 2.11 7.38 -52.49 -0.39 1.72 14 12 C 0.08 1.88 4.52 -17.33 -0.08 1.80 14 13 N -0.77 -19.75 11.11 55.55 0.62 -19.13 14 14 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 14 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 14 16 H -0.28 -5.46 7.11 56.52 0.40 -5.06 14 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 14 18 H 0.05 0.84 8.14 -51.92 -0.42 0.42 14 19 H 0.07 1.34 6.96 -51.93 -0.36 0.98 14 20 H 0.04 0.75 8.08 -51.93 -0.42 0.33 14 21 H 0.10 1.99 8.06 -52.49 -0.42 1.57 14 22 H 0.11 2.37 8.06 -52.49 -0.42 1.95 14 23 H 0.29 6.79 8.30 -40.82 -0.34 6.45 14 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -26.04 229.97 -7.26 -33.30 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -1.57 Total: -1.25 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.48 Total: -21.78 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: 0.62 Total: -19.13 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 35 Polarization: -1.95 SS G_CDS: -2.29 Total: -4.24 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.04 -7.26 -33.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219847232.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.567 kcal (2) G-P(sol) polarization free energy of solvation -26.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds