Wall clock time and date at job start Mon Mar 30 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36548 * 120.04636 * 2 1 4 4 C 1.38804 * 120.44066 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.74329 * 180.02562 * 4 3 2 6 6 C 1.38655 * 120.51116 * 0.02562 * 4 3 2 7 7 C 1.37922 * 120.08655 * 359.97438 * 6 4 3 8 8 F 1.35096 * 120.22327 * 180.02562 * 7 6 4 9 9 C 1.40701 * 120.05008 * 180.02562 * 2 1 3 10 10 C 1.41260 * 120.25015 * 0.02562 * 9 2 1 11 11 H 1.07995 * 120.00120 * 36.60500 * 10 9 2 12 12 C 1.39936 * 119.99640 * 216.60648 * 10 9 2 13 13 N 1.30851 * 119.99860 * 19.70135 * 12 10 9 14 14 Si 1.86797 * 119.99824 * 199.70287 * 12 10 9 15 15 H 1.48506 * 109.47128 * 59.99834 * 14 12 10 16 16 H 1.48495 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47228 * 300.00077 * 14 12 10 18 18 H 1.09009 * 109.47138 * 89.99865 * 1 2 3 19 19 H 1.08997 * 109.47148 * 209.99733 * 1 2 3 20 20 H 1.09002 * 109.47167 * 329.99862 * 1 2 3 21 21 H 1.08000 * 119.77865 * 359.74775 * 3 2 1 22 22 H 1.08001 * 119.95197 * 179.97438 * 6 4 3 23 23 H 0.97006 * 119.99595 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1820 0.0000 4 6 3.5787 1.1915 -0.0005 5 35 4.5055 2.8398 0.0002 6 6 4.2908 0.0019 -0.0016 7 6 3.6220 -1.2043 -0.0016 8 9 4.3131 -2.3651 -0.0022 9 6 2.2115 -1.2179 -0.0005 10 6 1.5116 -2.4449 -0.0016 11 1 0.5922 -2.5416 -0.5597 12 6 2.0098 -3.5351 0.7205 13 7 2.8743 -3.3419 1.6836 14 14 1.4407 -5.2662 0.3096 15 1 1.7885 -5.5802 -1.0996 16 1 2.1121 -6.2354 1.2123 17 1 -0.0305 -5.3592 0.4888 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6478 2.1156 -0.0041 22 1 5.3707 0.0198 -0.0024 23 1 3.2193 -4.0976 2.1844 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219847232.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:25 Heat of formation + Delta-G solvation = -50.483895 kcal Electronic energy + Delta-G solvation = -11975.403078 eV Core-core repulsion = 9555.028143 eV Total energy + Delta-G solvation = -2420.374936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.03993 -39.53184 -35.68617 -33.61902 -31.96971 -30.52906 -28.00968 -26.47813 -22.91317 -21.80120 -19.36608 -17.53368 -17.14860 -16.67149 -16.10660 -15.80655 -14.63599 -14.26692 -14.18727 -13.81986 -13.47794 -13.18743 -12.93431 -12.79443 -12.69406 -12.31561 -11.93298 -11.35684 -11.25340 -11.02111 -10.81779 -9.35050 -9.13491 -8.75309 -6.47457 0.59663 0.77829 1.01364 1.37359 1.46107 1.49950 2.17715 2.58983 3.33557 4.03106 4.16668 4.41103 4.71250 4.80415 4.98107 5.06430 5.13558 5.31320 5.38710 5.56578 5.67657 5.92363 6.15470 6.36554 6.75411 6.80505 8.24689 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.046295 B = 0.007235 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.675825 B = 3869.139494 C = 4344.984565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.170 4.170 3 C -0.071 4.071 4 C -0.181 4.181 5 Br -0.067 7.067 6 C -0.112 4.112 7 C 0.001 3.999 8 F -0.154 7.154 9 C 0.068 3.932 10 C -0.482 4.482 11 H 0.096 0.904 12 C 0.036 3.964 13 N -0.808 5.808 14 Si 0.978 3.022 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.250 1.250 18 H 0.065 0.935 19 H 0.056 0.944 20 H 0.070 0.930 21 H 0.134 0.866 22 H 0.118 0.882 23 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 6.429 -2.152 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.172 4.172 3 C -0.091 4.091 4 C -0.261 4.261 5 Br 0.017 6.983 6 C -0.133 4.133 7 C -0.020 4.020 8 F -0.133 7.133 9 C 0.065 3.935 10 C -0.510 4.510 11 H 0.114 0.886 12 C -0.182 4.182 13 N -0.432 5.432 14 Si 0.799 3.201 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.173 1.173 18 H 0.084 0.916 19 H 0.075 0.925 20 H 0.088 0.912 21 H 0.152 0.848 22 H 0.136 0.864 23 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.214 6.888 -1.946 7.161 hybrid contribution 0.237 -1.397 0.093 1.420 sum 0.023 5.490 -1.854 5.795 Atomic orbital electron populations 1.20450 0.89746 1.02054 1.01577 1.19844 0.97058 0.91247 1.09052 1.20466 0.91618 0.97982 0.99046 1.20818 0.94185 0.89440 1.21619 1.96391 1.76918 1.26482 1.98477 1.20623 0.99086 0.90709 1.02908 1.18035 0.90630 0.80359 1.13013 1.91280 1.79303 1.48269 1.94443 1.17940 0.90104 0.94734 0.90756 1.19692 1.09291 0.94932 1.27094 0.88606 1.26739 0.93494 1.05356 0.92620 1.69823 1.23446 1.35785 1.14098 0.85283 0.79898 0.75679 0.79238 1.18838 1.19700 1.17325 0.91630 0.92482 0.91154 0.84850 0.86352 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.95 9.44 71.23 0.67 -2.28 14 2 C -0.17 -7.54 5.90 -19.66 -0.12 -7.66 14 3 C -0.07 -2.92 9.34 22.01 0.21 -2.71 14 4 C -0.18 -7.59 6.24 22.51 0.14 -7.45 14 5 Br -0.07 -2.26 33.68 -20.37 -0.69 -2.95 14 6 C -0.11 -5.23 9.75 22.29 0.22 -5.02 14 7 C 0.00 0.04 6.69 22.89 0.15 0.20 14 8 F -0.15 -8.49 14.27 44.97 0.64 -7.85 14 9 C 0.07 3.51 5.40 -21.24 -0.11 3.39 14 10 C -0.48 -24.53 7.71 23.42 0.18 -24.35 14 11 H 0.10 4.55 7.38 -2.91 -0.02 4.53 14 12 C 0.04 1.78 4.52 85.25 0.39 2.16 14 13 N -0.81 -42.62 11.11 21.83 0.24 -42.38 14 14 Si 0.98 37.73 29.60 68.60 2.03 39.76 14 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 14 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 14 17 H -0.25 -8.94 7.11 99.48 0.71 -8.24 14 18 H 0.07 2.13 8.14 -2.38 -0.02 2.12 14 19 H 0.06 2.18 6.96 -2.39 -0.02 2.17 14 20 H 0.07 2.15 8.08 -2.39 -0.02 2.13 14 21 H 0.13 4.61 8.06 -2.91 -0.02 4.59 14 22 H 0.12 5.13 8.06 -2.91 -0.02 5.10 14 23 H 0.29 14.09 8.30 -92.70 -0.77 13.32 14 Total: -1.00 -55.49 229.97 5.18 -50.31 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.23 Total: 6.82 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 1.72 Total: -43.72 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.24 Total: -42.38 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.64 Total: -7.85 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 35 Polarization: -2.26 SS G_CDS: -0.69 Total: -2.95 kcal Total: -55.49 5.18 -50.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219847232.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.172 kcal (2) G-P(sol) polarization free energy of solvation -55.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds