Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47035 * 2 1 4 4 C 1.50704 * 109.47079 * 179.97438 * 3 2 1 5 5 N 1.30993 * 125.15742 * 304.97538 * 4 3 2 6 6 C 1.33104 * 109.98532 * 180.02562 * 5 4 3 7 7 Br 1.89098 * 126.28176 * 179.97438 * 6 5 4 8 8 C 1.39760 * 107.43247 * 0.02562 * 6 5 4 9 9 C 1.40004 * 127.07027 * 179.97438 * 8 6 5 10 10 H 1.08000 * 119.99687 * 216.36282 * 9 8 6 11 11 C 1.40051 * 120.00067 * 36.37087 * 9 8 6 12 12 N 1.30878 * 120.00147 * 21.52528 * 11 9 8 13 13 Si 1.86798 * 120.00061 * 201.53410 * 11 9 8 14 14 H 1.48502 * 109.46951 * 265.60599 * 13 11 9 15 15 H 1.48496 * 109.47250 * 25.60372 * 13 11 9 16 16 H 1.48493 * 109.47623 * 145.60463 * 13 11 9 17 17 N 1.35094 * 125.15769 * 125.32760 * 4 3 2 18 18 H 0.96998 * 126.48091 * 359.97438 * 17 4 3 19 19 H 1.08994 * 109.46984 * 299.99983 * 1 2 3 20 20 H 1.08999 * 109.46880 * 60.00250 * 1 2 3 21 21 H 1.09001 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47452 * 239.99793 * 2 1 3 23 23 H 1.09006 * 109.47262 * 119.99816 * 2 1 3 24 24 H 1.08998 * 109.46740 * 60.00258 * 3 2 1 25 25 H 1.08999 * 109.47082 * 299.99626 * 3 2 1 26 26 H 0.97001 * 119.99826 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3010 0.8288 0.8786 6 6 5.5857 1.0289 0.5940 7 35 7.0643 0.3544 1.5608 8 6 5.6413 1.8301 -0.5499 9 6 6.7911 2.2892 -1.2035 10 1 6.8042 3.2750 -1.6444 11 6 7.9241 1.4701 -1.2859 12 7 7.8057 0.1738 -1.1497 13 14 9.6043 2.2277 -1.5898 14 1 9.9022 2.2039 -3.0444 15 1 9.6089 3.6318 -1.1064 16 1 10.6375 1.4497 -0.8602 17 7 4.3253 2.0811 -0.9002 18 1 4.0201 2.6131 -1.6517 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 8.5905 -0.3935 -1.2064 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222215812.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = 7.017087 kcal Electronic energy + Delta-G solvation = -12017.719407 eV Core-core repulsion = 9755.590958 eV Total energy + Delta-G solvation = -2262.128450 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.92642 -36.04658 -35.18026 -33.13586 -31.49185 -30.20590 -28.50024 -25.19647 -22.58088 -21.92304 -20.97013 -18.97673 -17.65009 -16.57297 -15.97122 -15.29458 -15.01394 -14.69822 -14.09771 -13.65235 -13.27810 -13.01770 -12.85871 -12.69177 -12.29172 -12.01930 -11.97550 -11.63746 -11.53945 -11.20826 -10.52749 -10.19975 -10.06393 -8.76558 -8.35684 -6.32604 1.29666 1.45323 1.53412 1.57586 1.77819 2.28157 2.50271 2.87545 3.24357 4.06197 4.18580 4.28583 4.59302 4.78500 4.89278 5.03587 5.12070 5.26032 5.30038 5.42664 5.56046 5.66088 5.72313 6.37916 6.54312 6.92164 7.26881 7.70339 8.44893 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.008775 C = 0.007326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.404791 B = 3190.071833 C = 3821.120844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.010 4.010 4 C 0.126 3.874 5 N -0.492 5.492 6 C -0.133 4.133 7 Br -0.028 7.028 8 C 0.215 3.785 9 C -0.506 4.506 10 H 0.083 0.917 11 C 0.058 3.942 12 N -0.794 5.794 13 Si 0.967 3.033 14 H -0.261 1.261 15 H -0.260 1.260 16 H -0.271 1.271 17 N -0.599 5.599 18 H 0.417 0.583 19 H 0.062 0.938 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 1.719 0.009 5.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.049 4.049 4 C -0.135 4.135 5 N -0.213 5.213 6 C -0.336 4.336 7 Br 0.054 6.946 8 C 0.098 3.902 9 C -0.541 4.541 10 H 0.101 0.899 11 C -0.162 4.162 12 N -0.418 5.418 13 Si 0.789 3.211 14 H -0.186 1.186 15 H -0.184 1.184 16 H -0.196 1.196 17 N -0.212 5.212 18 H 0.255 0.745 19 H 0.081 0.919 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.846 0.716 1.125 5.026 hybrid contribution 0.834 0.836 -1.222 1.699 sum -4.012 1.552 -0.097 4.303 Atomic orbital electron populations 1.21717 0.93167 1.02293 1.02628 1.21352 0.97017 0.95365 1.01070 1.19877 0.83134 0.98477 1.03387 1.23137 0.95566 1.02006 0.92747 1.69080 1.02042 1.23007 1.27189 1.21803 0.90125 1.19097 1.02607 1.96063 1.39431 1.87233 1.71847 1.18737 0.83771 0.95046 0.92623 1.18419 0.95550 1.02325 1.37768 0.89943 1.26200 1.03305 0.94102 0.92599 1.69980 1.33449 1.05535 1.32871 0.85393 0.77025 0.79617 0.79086 1.18595 1.18359 1.19557 1.43317 1.06252 1.44969 1.26654 0.74457 0.91853 0.91499 0.92170 0.93787 0.93463 0.90018 0.88963 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.91 71.98 0.71 -2.25 15 2 C -0.11 -3.28 5.88 30.60 0.18 -3.10 15 3 C -0.01 -0.30 5.84 29.85 0.17 -0.13 15 4 C 0.13 5.56 7.39 137.97 1.02 6.58 15 5 N -0.49 -25.60 11.13 -179.78 -2.00 -27.60 15 6 C -0.13 -7.29 7.31 84.87 0.62 -6.67 15 7 Br -0.03 -1.43 30.68 -20.37 -0.63 -2.05 15 8 C 0.21 11.42 6.54 38.89 0.25 11.67 15 9 C -0.51 -26.36 9.31 23.14 0.22 -26.15 15 10 H 0.08 4.06 7.93 -2.91 -0.02 4.03 15 11 C 0.06 2.91 4.47 85.27 0.38 3.29 15 12 N -0.79 -41.55 10.61 21.85 0.23 -41.32 15 13 Si 0.97 38.42 29.61 68.60 2.03 40.45 15 14 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 15 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 16 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 17 N -0.60 -26.84 6.23 -178.68 -1.11 -27.95 15 18 H 0.42 15.33 8.96 -92.71 -0.83 14.50 15 19 H 0.06 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.05 1.64 8.14 -2.38 -0.02 1.62 15 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 Total: -1.00 -63.24 248.42 2.44 -60.79 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.36 Total: 14.44 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 3.56 Total: -16.76 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -2.88 Total: -96.87 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -0.63 Total: -2.05 kcal Total: -63.24 2.44 -60.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222215812.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.810 kcal (2) G-P(sol) polarization free energy of solvation -63.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds