Wall clock time and date at job start Mon Mar 30 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47174 * 2 1 4 4 C 1.81402 * 102.99999 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.53489 * 303.83998 * 4 3 2 6 6 C 1.54266 * 110.48685 * 66.45124 * 4 3 2 7 7 C 1.53869 * 106.60029 * 142.29073 * 6 4 3 8 8 C 1.54266 * 106.60080 * 359.97438 * 7 6 4 9 9 H 1.08991 * 110.48773 * 95.06564 * 8 7 6 10 10 N 1.46893 * 110.60061 * 217.66020 * 8 7 6 11 11 C 1.46896 * 110.99996 * 269.83712 * 10 8 7 12 12 C 1.53004 * 109.47379 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47163 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99684 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99667 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47155 * 90.00324 * 18 16 14 20 20 H 1.48506 * 109.47098 * 210.00366 * 18 16 14 21 21 H 1.48503 * 109.47508 * 329.99945 * 18 16 14 22 22 C 1.54891 * 110.48526 * 181.22430 * 4 3 2 23 23 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47514 * 300.00100 * 1 2 3 25 25 H 1.09001 * 109.47007 * 60.00555 * 1 2 3 26 26 H 1.09001 * 109.47329 * 239.99138 * 2 1 3 27 27 H 1.09001 * 109.46559 * 119.99737 * 2 1 3 28 28 H 1.09000 * 110.03049 * 261.57731 * 6 4 3 29 29 H 1.09001 * 110.03650 * 23.00215 * 6 4 3 30 30 H 1.08999 * 110.03445 * 119.28652 * 7 6 4 31 31 H 1.09009 * 110.03169 * 240.71589 * 7 6 4 32 32 H 1.00910 * 111.00361 * 145.88401 * 10 8 7 33 33 H 1.08996 * 109.47280 * 300.00221 * 11 10 8 34 34 H 1.08996 * 109.46921 * 60.00095 * 11 10 8 35 35 H 1.09002 * 109.46873 * 299.99806 * 12 11 10 36 36 H 1.08996 * 109.47182 * 60.00051 * 12 11 10 37 37 H 1.09002 * 109.46928 * 299.99601 * 13 12 11 38 38 H 1.08996 * 109.47169 * 59.99872 * 13 12 11 39 39 H 0.97002 * 120.00122 * 179.97438 * 17 16 14 40 40 H 1.08997 * 110.75776 * 321.69361 * 22 4 3 41 41 H 1.08994 * 110.75338 * 85.06649 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2526 0.8980 0.8488 6 6 4.4091 0.8710 -1.3237 7 6 5.7409 1.5506 -1.6868 8 6 6.0316 2.5751 -0.5707 9 1 6.6853 2.1404 0.1854 10 7 6.6336 3.7925 -1.1305 11 6 8.0988 3.6907 -1.1577 12 6 8.6884 4.9745 -1.7452 13 6 10.2144 4.8683 -1.7741 14 6 10.7952 6.1326 -2.3533 15 1 10.1412 6.9320 -2.6689 16 6 12.1614 6.2689 -2.4795 17 7 12.9577 5.2956 -2.0947 18 14 12.8812 7.8363 -3.1968 19 1 13.1346 8.8098 -2.1044 20 1 14.1581 7.5237 -3.8875 21 1 11.9231 8.4214 -4.1689 22 6 4.6392 2.8860 0.0319 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 4.5604 -0.2003 -1.1912 29 1 3.6726 1.0503 -2.1070 30 1 6.5387 0.8092 -1.7306 31 1 5.6509 2.0599 -2.6463 32 1 6.3373 4.6105 -0.6193 33 1 8.4721 3.5509 -0.1433 34 1 8.3925 2.8406 -1.7734 35 1 8.3151 5.1147 -2.7597 36 1 8.3946 5.8244 -1.1292 37 1 10.5881 4.7278 -0.7598 38 1 10.5079 4.0185 -2.3903 39 1 13.9188 5.3914 -2.1838 40 1 4.1032 3.6061 -0.5864 41 1 4.7333 3.2485 1.0555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233871129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:51 Heat of formation + Delta-G solvation = -37.549857 kcal Electronic energy + Delta-G solvation = -16526.154369 eV Core-core repulsion = 13951.489938 eV Total energy + Delta-G solvation = -2574.664431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.62371 -35.33059 -33.21355 -33.08341 -31.00525 -28.94597 -27.66845 -25.38892 -23.77625 -22.40664 -21.07712 -20.12080 -19.76376 -16.86568 -16.26779 -16.16085 -15.55227 -15.10617 -14.90558 -14.55520 -14.28203 -13.80234 -13.54621 -13.01042 -12.75885 -12.36318 -12.30429 -11.97012 -11.83560 -11.61639 -11.35072 -11.22481 -11.18561 -10.93576 -10.83084 -10.55925 -10.52454 -10.42784 -10.02059 -9.67244 -9.30843 -9.02875 -8.32410 -8.18261 -7.90354 -5.97509 -3.99438 1.40759 2.32185 3.33858 3.39837 3.43906 4.19238 4.28999 4.48219 4.55416 4.59645 4.67812 4.74930 5.01481 5.20446 5.25489 5.27952 5.33734 5.36973 5.38276 5.41343 5.54958 5.66856 5.69560 5.83003 5.83585 5.90770 6.01930 6.10395 6.27685 6.35135 6.74384 6.81418 7.16282 7.38340 7.64391 7.71105 7.86107 8.03077 8.46499 9.07831 9.64416 11.13951 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.075856 B = 0.002650 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.030844 B =10564.663585 C =10712.218405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.260 6.260 4 C -0.055 4.055 5 H 0.089 0.911 6 C -0.117 4.117 7 C -0.113 4.113 8 C 0.085 3.915 9 H 0.050 0.950 10 N -0.683 5.683 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.103 4.103 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.339 0.661 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.087 0.913 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.208 -11.804 5.276 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.031 6.031 4 C -0.184 4.184 5 H 0.107 0.893 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.026 4.026 9 H 0.068 0.932 10 N -0.314 5.314 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.142 4.142 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.726 -11.135 4.651 25.731 hybrid contribution 1.518 -0.290 0.654 1.678 sum -21.208 -11.426 5.305 24.667 Atomic orbital electron populations 1.21513 0.92361 1.02424 1.03191 1.23282 1.00051 0.95790 1.04803 1.86921 1.05760 1.12504 1.97920 1.23944 0.92235 1.01079 1.01191 0.89310 1.22527 0.98339 0.99236 0.95604 1.22178 0.95583 0.97322 1.00114 1.22338 0.93586 0.91996 0.94695 0.93195 1.60636 1.09403 1.03572 1.57791 1.22175 0.85191 1.00655 0.98901 1.21626 0.98940 0.94069 0.99882 1.19067 0.88388 0.97138 0.96987 1.21264 0.91565 1.01845 1.40966 0.92655 1.25037 0.97354 0.96498 0.95718 1.69965 1.03568 1.32098 1.48017 0.86590 0.78541 0.83585 0.79263 1.20712 1.21255 1.19843 1.22516 0.95181 0.94868 1.01605 0.91241 0.91761 0.91653 0.90100 0.90361 0.91920 0.90435 0.92000 0.89973 0.84292 0.95795 0.91509 0.92540 0.93657 0.96859 0.96600 0.93061 0.89410 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.09 -0.66 6.52 37.16 0.24 -0.42 16 3 S -0.26 -2.56 21.01 -107.50 -2.26 -4.82 16 4 C -0.06 -0.53 3.38 -25.07 -0.08 -0.61 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.12 -1.11 6.25 -25.62 -0.16 -1.27 16 7 C -0.11 -1.29 6.53 -25.62 -0.17 -1.45 16 8 C 0.09 1.04 3.19 -66.07 -0.21 0.83 16 9 H 0.05 0.63 7.82 -51.93 -0.41 0.22 16 10 N -0.68 -9.93 6.32 -105.00 -0.66 -10.59 16 11 C 0.06 1.03 5.55 -3.82 -0.02 1.01 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.10 -1.08 5.70 -24.75 -0.14 -1.22 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.05 8.04 -51.92 -0.42 0.63 16 32 H 0.34 4.64 8.42 -39.29 -0.33 4.31 16 33 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.09 1.00 8.05 -51.93 -0.42 0.59 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -30.11 341.71 -10.78 -40.89 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.86 Total: -1.63 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -0.87 Total: -19.34 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.07 Total: -37.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.26 Total: -4.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.11 -10.78 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233871129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.340 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds