Wall clock time and date at job start Mon Mar 30 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47174 * 2 1 4 4 C 1.81402 * 102.99999 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.53489 * 303.83998 * 4 3 2 6 6 C 1.54266 * 110.48685 * 66.45124 * 4 3 2 7 7 C 1.53869 * 106.60029 * 142.29073 * 6 4 3 8 8 C 1.54266 * 106.60080 * 359.97438 * 7 6 4 9 9 H 1.08991 * 110.48773 * 95.06564 * 8 7 6 10 10 N 1.46893 * 110.60061 * 217.66020 * 8 7 6 11 11 C 1.46896 * 110.99996 * 269.83712 * 10 8 7 12 12 C 1.53004 * 109.47379 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47163 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99639 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99684 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99667 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47155 * 90.00324 * 18 16 14 20 20 H 1.48506 * 109.47098 * 210.00366 * 18 16 14 21 21 H 1.48503 * 109.47508 * 329.99945 * 18 16 14 22 22 C 1.54891 * 110.48526 * 181.22430 * 4 3 2 23 23 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47514 * 300.00100 * 1 2 3 25 25 H 1.09001 * 109.47007 * 60.00555 * 1 2 3 26 26 H 1.09001 * 109.47329 * 239.99138 * 2 1 3 27 27 H 1.09001 * 109.46559 * 119.99737 * 2 1 3 28 28 H 1.09000 * 110.03049 * 261.57731 * 6 4 3 29 29 H 1.09001 * 110.03650 * 23.00215 * 6 4 3 30 30 H 1.08999 * 110.03445 * 119.28652 * 7 6 4 31 31 H 1.09009 * 110.03169 * 240.71589 * 7 6 4 32 32 H 1.00910 * 111.00361 * 145.88401 * 10 8 7 33 33 H 1.08996 * 109.47280 * 300.00221 * 11 10 8 34 34 H 1.08996 * 109.46921 * 60.00095 * 11 10 8 35 35 H 1.09002 * 109.46873 * 299.99806 * 12 11 10 36 36 H 1.08996 * 109.47182 * 60.00051 * 12 11 10 37 37 H 1.09002 * 109.46928 * 299.99601 * 13 12 11 38 38 H 1.08996 * 109.47169 * 59.99872 * 13 12 11 39 39 H 0.97002 * 120.00122 * 179.97438 * 17 16 14 40 40 H 1.08997 * 110.75776 * 321.69361 * 22 4 3 41 41 H 1.08994 * 110.75338 * 85.06649 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2526 0.8980 0.8488 6 6 4.4091 0.8710 -1.3237 7 6 5.7409 1.5506 -1.6868 8 6 6.0316 2.5751 -0.5707 9 1 6.6853 2.1404 0.1854 10 7 6.6336 3.7925 -1.1305 11 6 8.0988 3.6907 -1.1577 12 6 8.6884 4.9745 -1.7452 13 6 10.2144 4.8683 -1.7741 14 6 10.7952 6.1326 -2.3533 15 1 10.1412 6.9320 -2.6689 16 6 12.1614 6.2689 -2.4795 17 7 12.9577 5.2956 -2.0947 18 14 12.8812 7.8363 -3.1968 19 1 13.1346 8.8098 -2.1044 20 1 14.1581 7.5237 -3.8875 21 1 11.9231 8.4214 -4.1689 22 6 4.6392 2.8860 0.0319 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 4.5604 -0.2003 -1.1912 29 1 3.6726 1.0503 -2.1070 30 1 6.5387 0.8092 -1.7306 31 1 5.6509 2.0599 -2.6463 32 1 6.3373 4.6105 -0.6193 33 1 8.4721 3.5509 -0.1433 34 1 8.3925 2.8406 -1.7734 35 1 8.3151 5.1147 -2.7597 36 1 8.3946 5.8244 -1.1292 37 1 10.5881 4.7278 -0.7598 38 1 10.5079 4.0185 -2.3903 39 1 13.9188 5.3914 -2.1838 40 1 4.1032 3.6061 -0.5864 41 1 4.7333 3.2485 1.0555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233871129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:51 Heat of formation + Delta-G solvation = -54.079584 kcal Electronic energy + Delta-G solvation = -16526.871152 eV Core-core repulsion = 13951.489938 eV Total energy + Delta-G solvation = -2575.381213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60008 -36.82103 -35.05322 -33.66145 -32.76091 -29.81363 -29.08441 -26.98950 -24.46008 -24.05475 -22.25664 -21.42837 -20.87425 -18.48113 -17.73199 -16.97791 -16.57098 -16.51785 -16.06035 -15.70982 -15.44356 -15.07187 -14.46293 -14.31563 -14.10473 -13.56811 -13.45245 -13.28200 -12.91086 -12.79382 -12.60381 -12.50999 -12.36577 -12.19722 -12.06326 -12.04363 -11.68148 -11.58280 -11.44047 -11.35343 -11.04353 -10.73009 -10.55700 -9.38746 -8.65863 -8.20499 -6.31498 0.71603 1.39857 1.41431 1.52821 1.64421 2.40869 3.12437 3.14087 3.45208 3.70250 3.91989 4.04522 4.10717 4.21861 4.27328 4.40688 4.43445 4.46900 4.50999 4.53957 4.66015 4.72459 4.83663 4.88161 4.92390 4.93564 5.04686 5.08255 5.15709 5.22605 5.23581 5.26799 5.33637 5.52490 5.74884 5.85630 6.10993 6.27546 6.48956 6.85403 7.37646 8.91408 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.075856 B = 0.002650 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.030844 B =10564.663585 C =10712.218405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 S -0.299 6.299 4 C -0.046 4.046 5 H 0.099 0.901 6 C -0.109 4.109 7 C -0.112 4.112 8 C 0.084 3.916 9 H 0.051 0.949 10 N -0.684 5.684 11 C 0.074 3.926 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.096 4.096 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.051 0.949 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.078 0.922 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.337 -11.905 5.395 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.230 4.230 3 S -0.071 6.071 4 C -0.176 4.176 5 H 0.117 0.883 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.028 4.028 9 H 0.069 0.931 10 N -0.316 5.316 11 C -0.055 4.055 12 C -0.131 4.131 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.135 4.135 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.878 -11.236 4.774 26.818 hybrid contribution 1.833 -0.311 0.628 1.962 sum -22.045 -11.547 5.403 25.466 Atomic orbital electron populations 1.21528 0.91562 1.03518 1.02735 1.23359 1.00604 0.93460 1.05582 1.87081 1.06335 1.15653 1.98006 1.23863 0.91839 1.00363 1.01504 0.88317 1.22454 0.96928 0.99981 0.95466 1.22155 0.96818 0.97143 0.99062 1.22403 0.94296 0.91040 0.95012 0.93142 1.60559 1.07353 1.05010 1.58646 1.21856 0.87030 0.98298 0.98327 1.21379 0.95348 0.96254 1.00093 1.18973 0.91983 0.95479 0.94827 1.21704 0.92289 1.02794 1.41322 0.92258 1.26012 0.97848 1.00224 0.95970 1.70096 1.04014 1.34325 1.48968 0.85425 0.77745 0.79034 0.78713 1.19677 1.20665 1.18799 1.22427 0.93994 0.95448 1.01625 0.89274 0.92132 0.92217 0.89414 0.89419 0.90261 0.90704 0.91966 0.91546 0.83611 0.95857 0.92140 0.92983 0.93067 0.99083 0.99068 0.92761 0.90330 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.92 71.98 0.71 -0.68 16 2 C -0.08 -1.02 6.52 71.98 0.47 -0.55 16 3 S -0.30 -5.51 21.01 -56.49 -1.19 -6.69 16 4 C -0.05 -0.81 3.38 31.67 0.11 -0.70 16 5 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.11 -1.87 6.25 31.32 0.20 -1.68 16 7 C -0.11 -2.46 6.53 31.32 0.20 -2.26 16 8 C 0.08 1.95 3.19 45.99 0.15 2.09 16 9 H 0.05 1.20 7.82 -2.39 -0.02 1.18 16 10 N -0.68 -19.43 6.32 -486.10 -3.07 -22.50 16 11 C 0.07 2.57 5.55 86.31 0.48 3.05 16 12 C -0.09 -3.92 5.41 30.60 0.17 -3.75 16 13 C 0.03 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 17 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 18 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 C -0.10 -1.91 5.70 31.88 0.18 -1.72 16 23 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.35 7.79 -2.39 -0.02 1.34 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.67 8.04 -2.38 -0.02 1.65 16 32 H 0.35 9.11 8.42 -89.69 -0.75 8.35 16 33 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.42 341.71 1.77 -62.65 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.21 Total: 12.80 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 3.51 Total: -35.85 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.79 Total: -79.89 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.19 Total: -6.69 kcal Total: -64.42 1.77 -62.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233871129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.569 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds