Wall clock time and date at job start Mon Mar 30 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47223 * 2 1 4 4 C 1.81401 * 103.00131 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.43146 * 303.91188 * 4 3 2 6 6 C 1.54887 * 110.48678 * 66.45118 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52917 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 H 1.09001 * 109.89722 * 264.08156 * 8 7 6 10 10 N 1.46903 * 110.12005 * 142.72589 * 8 7 6 11 11 C 1.46905 * 110.99628 * 87.67835 * 10 8 7 12 12 C 1.53001 * 109.46818 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47034 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47206 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47299 * 89.99640 * 18 16 14 20 20 H 1.48497 * 109.47416 * 209.99741 * 18 16 14 21 21 H 1.48504 * 109.46783 * 329.99936 * 18 16 14 22 22 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47374 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.47239 * 60.00448 * 1 2 3 26 26 H 1.09005 * 109.46961 * 240.00294 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00252 * 2 1 3 28 28 H 1.09002 * 110.75856 * 274.93827 * 6 4 3 29 29 H 1.09006 * 110.75640 * 38.12813 * 6 4 3 30 30 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 31 31 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 32 32 H 1.00906 * 110.99672 * 211.62729 * 10 8 7 33 33 H 1.08997 * 109.46842 * 299.99537 * 11 10 8 34 34 H 1.08998 * 109.47355 * 59.99785 * 11 10 8 35 35 H 1.09003 * 109.46757 * 299.99735 * 12 11 10 36 36 H 1.08998 * 109.47315 * 59.99783 * 12 11 10 37 37 H 1.09003 * 109.47177 * 299.99533 * 13 12 11 38 38 H 1.08998 * 109.47202 * 59.99769 * 13 12 11 39 39 H 0.96998 * 120.00186 * 179.97438 * 17 16 14 40 40 H 1.08995 * 110.02951 * 240.87549 * 22 8 7 41 41 H 1.08993 * 110.03177 * 119.44086 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 1 4.2513 0.8965 0.8467 6 6 4.4099 0.8689 -1.3312 7 6 5.8885 1.3205 -1.4248 8 6 5.8773 2.7628 -0.8721 9 1 5.8098 3.4748 -1.6946 10 7 7.0946 3.0132 -0.0888 11 6 8.1857 3.4896 -0.9494 12 6 9.4333 3.7394 -0.0998 13 6 10.5699 4.2349 -0.9962 14 6 11.7987 4.4816 -0.1593 15 1 11.7717 4.3024 0.9054 16 6 12.9572 4.9360 -0.7528 17 7 12.9901 5.1537 -2.0494 18 14 14.4805 5.2411 0.2844 19 1 15.2937 4.0001 0.3468 20 1 15.2850 6.3299 -0.3258 21 1 14.0737 5.6358 1.6571 22 6 4.6364 2.8805 0.0302 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.3400 -0.2179 -1.2855 29 1 3.8336 1.2566 -2.1713 30 1 6.5221 0.6823 -0.8089 31 1 6.2262 1.3084 -2.4612 32 1 6.9146 3.6644 0.6608 33 1 8.4060 2.7372 -1.7066 34 1 7.8859 4.4178 -1.4359 35 1 9.2127 4.4920 0.6572 36 1 9.7332 2.8114 0.3870 37 1 10.7904 3.4820 -1.7529 38 1 10.2702 5.1628 -1.4834 39 1 13.8050 5.4737 -2.4669 40 1 3.9663 3.6490 -0.3550 41 1 4.9374 3.1234 1.0492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233874592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:53 Heat of formation + Delta-G solvation = -36.802678 kcal Electronic energy + Delta-G solvation = -16551.650100 eV Core-core repulsion = 13977.018070 eV Total energy + Delta-G solvation = -2574.632031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.65249 -35.29079 -33.20234 -33.07464 -30.99705 -28.96812 -27.64371 -25.38139 -23.76340 -22.39266 -21.06696 -20.34198 -19.64329 -16.83568 -16.29827 -15.90243 -15.52344 -15.31790 -15.01295 -14.48594 -14.19635 -13.74086 -13.67348 -13.01989 -12.78711 -12.34464 -12.19826 -11.91359 -11.80417 -11.57283 -11.31438 -11.26456 -11.11137 -11.01921 -10.83655 -10.67495 -10.52790 -10.44264 -10.03533 -9.67399 -9.30925 -9.03082 -8.32607 -8.17085 -7.90555 -5.97713 -3.99740 1.43119 2.33299 3.33589 3.39515 3.43215 4.27156 4.35383 4.38793 4.49810 4.56600 4.62809 4.96582 5.02258 5.17820 5.25909 5.34759 5.35065 5.37976 5.39177 5.42531 5.57132 5.62036 5.69848 5.83725 5.84048 5.86800 6.01042 6.05249 6.27069 6.35054 6.73852 6.81086 7.15886 7.38356 7.64346 7.70821 7.85928 8.02865 8.46153 9.07529 9.64123 11.13737 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.075319 B = 0.002661 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.665386 B =10519.817444 C =10624.223528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 S -0.268 6.268 4 C -0.050 4.050 5 H 0.092 0.908 6 C -0.117 4.117 7 C -0.111 4.111 8 C 0.085 3.915 9 H 0.049 0.951 10 N -0.685 5.685 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.102 4.102 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.338 0.662 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.403 -9.719 2.540 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.238 4.238 3 S -0.039 6.039 4 C -0.179 4.179 5 H 0.110 0.890 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.026 4.026 9 H 0.067 0.933 10 N -0.317 5.317 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.141 4.141 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.717 -9.373 2.406 25.616 hybrid contribution 1.360 -0.014 0.300 1.393 sum -22.358 -9.386 2.706 24.399 Atomic orbital electron populations 1.21515 0.92410 1.02418 1.03138 1.23270 0.99982 0.95661 1.04853 1.86872 1.06318 1.12798 1.97957 1.23967 0.91522 1.00963 1.01451 0.88958 1.22853 0.97066 0.99947 0.95853 1.22464 0.95239 0.96163 1.01204 1.22162 0.88834 0.96951 0.94694 0.93333 1.60749 1.05922 1.51890 1.13125 1.22173 0.91474 0.97535 0.95800 1.21621 0.94040 1.00373 0.98454 1.19067 0.91708 0.96111 0.94705 1.21260 0.96133 1.43846 0.94413 0.92681 1.25038 0.98928 0.95692 0.94947 1.69968 1.27834 1.46337 1.09486 0.86590 0.83067 0.77859 0.80460 1.20665 1.21268 1.19892 1.22170 0.95903 0.94812 1.01177 0.91238 0.91763 0.91725 0.90111 0.90268 0.91534 0.90410 0.90064 0.91515 0.84386 0.91507 0.95754 0.93686 0.92605 0.96608 0.96827 0.93053 0.90816 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.09 -0.66 6.53 37.16 0.24 -0.42 16 3 S -0.27 -2.65 21.01 -107.50 -2.26 -4.90 16 4 C -0.05 -0.49 3.39 -25.07 -0.08 -0.58 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.12 -1.11 6.20 -24.74 -0.15 -1.26 16 7 C -0.11 -1.25 6.52 -24.97 -0.16 -1.42 16 8 C 0.08 1.03 3.25 -66.49 -0.22 0.82 16 9 H 0.05 0.63 7.81 -51.93 -0.41 0.22 16 10 N -0.69 -9.86 6.27 -105.43 -0.66 -10.52 16 11 C 0.06 1.02 5.51 -3.82 -0.02 1.00 16 12 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.10 -1.08 6.07 -25.61 -0.16 -1.23 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 30 H 0.08 1.00 8.05 -51.93 -0.42 0.59 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.34 4.56 8.01 -39.29 -0.31 4.25 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 41 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -30.05 340.90 -10.75 -40.80 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.81 Total: -1.60 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.88 Total: -19.26 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.08 Total: -37.10 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.26 Total: -4.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.05 -10.75 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233874592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.000 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds