Wall clock time and date at job start Mon Mar 30 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47223 * 2 1 4 4 C 1.81401 * 103.00131 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.43146 * 303.91188 * 4 3 2 6 6 C 1.54887 * 110.48678 * 66.45118 * 4 3 2 7 7 C 1.54890 * 102.91108 * 156.52917 * 6 4 3 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 H 1.09001 * 109.89722 * 264.08156 * 8 7 6 10 10 N 1.46903 * 110.12005 * 142.72589 * 8 7 6 11 11 C 1.46905 * 110.99628 * 87.67835 * 10 8 7 12 12 C 1.53001 * 109.46818 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47034 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47206 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99644 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47299 * 89.99640 * 18 16 14 20 20 H 1.48497 * 109.47416 * 209.99741 * 18 16 14 21 21 H 1.48504 * 109.46783 * 329.99936 * 18 16 14 22 22 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47374 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.47239 * 60.00448 * 1 2 3 26 26 H 1.09005 * 109.46961 * 240.00294 * 2 1 3 27 27 H 1.08997 * 109.46952 * 120.00252 * 2 1 3 28 28 H 1.09002 * 110.75856 * 274.93827 * 6 4 3 29 29 H 1.09006 * 110.75640 * 38.12813 * 6 4 3 30 30 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 31 31 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 32 32 H 1.00906 * 110.99672 * 211.62729 * 10 8 7 33 33 H 1.08997 * 109.46842 * 299.99537 * 11 10 8 34 34 H 1.08998 * 109.47355 * 59.99785 * 11 10 8 35 35 H 1.09003 * 109.46757 * 299.99735 * 12 11 10 36 36 H 1.08998 * 109.47315 * 59.99783 * 12 11 10 37 37 H 1.09003 * 109.47177 * 299.99533 * 13 12 11 38 38 H 1.08998 * 109.47202 * 59.99769 * 13 12 11 39 39 H 0.96998 * 120.00186 * 179.97438 * 17 16 14 40 40 H 1.08995 * 110.02951 * 240.87549 * 22 8 7 41 41 H 1.08993 * 110.03177 * 119.44086 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 1 4.2513 0.8965 0.8467 6 6 4.4099 0.8689 -1.3312 7 6 5.8885 1.3205 -1.4248 8 6 5.8773 2.7628 -0.8721 9 1 5.8098 3.4748 -1.6946 10 7 7.0946 3.0132 -0.0888 11 6 8.1857 3.4896 -0.9494 12 6 9.4333 3.7394 -0.0998 13 6 10.5699 4.2349 -0.9962 14 6 11.7987 4.4816 -0.1593 15 1 11.7717 4.3024 0.9054 16 6 12.9572 4.9360 -0.7528 17 7 12.9901 5.1537 -2.0494 18 14 14.4805 5.2411 0.2844 19 1 15.2937 4.0001 0.3468 20 1 15.2850 6.3299 -0.3258 21 1 14.0737 5.6358 1.6571 22 6 4.6364 2.8805 0.0302 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.3400 -0.2179 -1.2855 29 1 3.8336 1.2566 -2.1713 30 1 6.5221 0.6823 -0.8089 31 1 6.2262 1.3084 -2.4612 32 1 6.9146 3.6644 0.6608 33 1 8.4060 2.7372 -1.7066 34 1 7.8859 4.4178 -1.4359 35 1 9.2127 4.4920 0.6572 36 1 9.7332 2.8114 0.3870 37 1 10.7904 3.4820 -1.7529 38 1 10.2702 5.1628 -1.4834 39 1 13.8050 5.4737 -2.4669 40 1 3.9663 3.6490 -0.3550 41 1 4.9374 3.1234 1.0492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233874592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:53 Heat of formation + Delta-G solvation = -53.217638 kcal Electronic energy + Delta-G solvation = -16552.361906 eV Core-core repulsion = 13977.018070 eV Total energy + Delta-G solvation = -2575.343837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63556 -36.78902 -35.03185 -33.66109 -32.74613 -29.84236 -29.06375 -26.97776 -24.45676 -24.03854 -22.17488 -21.67161 -20.80219 -18.49941 -17.62116 -16.83682 -16.66118 -16.48677 -16.24674 -15.67386 -15.26697 -15.19977 -14.54146 -14.30529 -14.07551 -13.56679 -13.44146 -13.29105 -12.81211 -12.73585 -12.58792 -12.47400 -12.36850 -12.13536 -12.10049 -11.95044 -11.87246 -11.61475 -11.48011 -11.35429 -11.04575 -10.75507 -10.55759 -9.37886 -8.66244 -8.20462 -6.31602 0.73158 1.39835 1.41472 1.52656 1.64282 2.40789 3.12461 3.20532 3.44514 3.54553 4.04556 4.08036 4.14121 4.20390 4.29284 4.35691 4.44917 4.47047 4.53155 4.55446 4.70566 4.74087 4.79583 4.88319 4.92246 4.94088 5.01495 5.06751 5.14468 5.17752 5.23276 5.25306 5.36184 5.52341 5.74775 5.85606 6.10154 6.27220 6.49599 6.85423 7.37610 8.91469 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.075319 B = 0.002661 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.665386 B =10519.817444 C =10624.223528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 S -0.302 6.302 4 C -0.043 4.043 5 H 0.094 0.906 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.083 3.917 9 H 0.042 0.958 10 N -0.683 5.683 11 C 0.073 3.927 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.263 1.263 22 C -0.096 4.096 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.344 0.656 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.050 0.950 36 H 0.053 0.947 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.088 -10.586 3.667 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.230 4.230 3 S -0.074 6.074 4 C -0.172 4.172 5 H 0.112 0.888 6 C -0.147 4.147 7 C -0.150 4.150 8 C -0.028 4.028 9 H 0.060 0.940 10 N -0.315 5.315 11 C -0.056 4.056 12 C -0.130 4.130 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.135 4.135 23 H 0.107 0.893 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.423 -10.246 3.544 26.721 hybrid contribution 1.516 0.236 -0.078 1.537 sum -22.906 -10.010 3.466 25.237 Atomic orbital electron populations 1.21527 0.91531 1.03513 1.02734 1.23354 1.00611 0.93449 1.05564 1.87010 1.06587 1.15760 1.98030 1.23873 0.91368 1.00280 1.01651 0.88778 1.22788 0.95416 1.00814 0.95678 1.22434 0.96500 0.95317 1.00777 1.22227 0.88462 0.97411 0.94651 0.93952 1.60692 1.06185 1.51644 1.12978 1.21858 0.91138 0.97320 0.95307 1.21371 0.93772 0.99996 0.97854 1.18977 0.93258 0.94364 0.94709 1.21702 0.97351 1.44060 0.94955 0.92211 1.26020 1.02587 0.95223 0.96261 1.70100 1.28979 1.47002 1.11358 0.85421 0.78552 0.78021 0.78897 1.19719 1.20691 1.18724 1.22091 0.95083 0.95516 1.00808 0.89306 0.92183 0.92131 0.89324 0.89581 0.90063 0.90320 0.90991 0.91717 0.83665 0.92097 0.96093 0.93111 0.92841 0.99072 0.99176 0.92769 0.90870 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.92 71.98 0.71 -0.68 16 2 C -0.08 -1.04 6.53 71.98 0.47 -0.57 16 3 S -0.30 -5.55 21.01 -56.49 -1.19 -6.74 16 4 C -0.04 -0.77 3.39 31.67 0.11 -0.66 16 5 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 6 C -0.11 -1.83 6.20 31.88 0.20 -1.64 16 7 C -0.11 -2.38 6.52 31.74 0.21 -2.18 16 8 C 0.08 1.96 3.25 45.71 0.15 2.11 16 9 H 0.04 1.07 7.81 -2.39 -0.02 1.05 16 10 N -0.68 -19.09 6.27 -487.46 -3.06 -22.15 16 11 C 0.07 2.54 5.51 86.30 0.48 3.01 16 12 C -0.09 -3.86 5.41 30.59 0.17 -3.70 16 13 C 0.02 1.33 4.97 29.85 0.15 1.47 16 14 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 18 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.10 -1.92 6.07 31.32 0.19 -1.73 16 23 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.36 8.05 -2.38 -0.02 1.34 16 30 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.34 8.90 8.01 -89.69 -0.72 8.19 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.02 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.07 1.49 7.79 -2.39 -0.02 1.47 16 41 H 0.08 1.62 7.47 -2.39 -0.02 1.60 16 Total: -1.00 -64.14 340.90 1.83 -62.31 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.24 Total: 12.76 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.52 Total: -35.64 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.77 Total: -79.59 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -5.55 SS G_CDS: -1.19 Total: -6.74 kcal Total: -64.14 1.83 -62.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233874592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.096 kcal (2) G-P(sol) polarization free energy of solvation -64.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds