Wall clock time and date at job start Mon Mar 30 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00177 * 2 1 4 4 C 1.52997 * 109.47367 * 185.00195 * 3 2 1 5 5 C 1.53003 * 109.47371 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46985 * 59.99890 * 5 4 3 7 7 N 1.46901 * 109.47187 * 59.99819 * 6 5 4 8 8 C 1.46905 * 110.99870 * 154.99992 * 7 6 5 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47360 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00108 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46845 * 60.00484 * 15 13 11 17 17 H 1.48498 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47227 * 300.00326 * 15 13 11 19 19 C 1.53003 * 109.46931 * 300.00020 * 6 5 4 20 20 C 1.52996 * 109.47321 * 64.99541 * 3 2 1 21 21 H 1.09000 * 109.47101 * 300.00038 * 1 2 3 22 22 H 1.09003 * 109.47119 * 60.00205 * 1 2 3 23 23 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47120 * 304.99788 * 3 2 1 25 25 H 1.08998 * 109.47168 * 59.99375 * 4 3 2 26 26 H 1.09002 * 109.47046 * 299.99541 * 4 3 2 27 27 H 1.08993 * 109.47138 * 299.99887 * 5 4 3 28 28 H 1.08995 * 109.47280 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47284 * 180.02562 * 6 5 4 30 30 H 1.00901 * 111.00067 * 278.95167 * 7 6 5 31 31 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 32 32 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 33 33 H 1.09001 * 109.47393 * 299.99719 * 9 8 7 34 34 H 1.08998 * 109.47408 * 60.00073 * 9 8 7 35 35 H 1.09001 * 109.46514 * 300.00105 * 10 9 8 36 36 H 1.08998 * 109.46924 * 59.99625 * 10 9 8 37 37 H 0.97004 * 119.99990 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47106 * 180.02562 * 19 6 5 39 39 H 1.08993 * 109.47190 * 300.00002 * 19 6 5 40 40 H 1.09001 * 109.47486 * 300.00169 * 20 3 2 41 41 H 1.09002 * 109.46901 * 60.00575 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7369 1.9411 -0.1258 5 6 4.0811 3.4320 -0.1264 6 6 3.6018 4.0666 1.1807 7 7 4.2656 3.4112 2.3155 8 6 4.3231 4.3054 3.4797 9 6 5.0202 3.5897 4.6384 10 6 5.0796 4.5207 5.8511 11 6 5.7656 3.8156 6.9927 12 1 6.1238 2.8046 6.8658 13 6 5.9368 4.4614 8.1987 14 7 5.5010 5.6926 8.3530 15 14 6.7865 3.5871 9.6140 16 1 8.1652 3.2131 9.2085 17 1 6.8442 4.4908 10.7910 18 1 6.0252 2.3622 9.9678 19 6 2.0869 3.8929 1.3063 20 6 1.7428 2.4016 1.3072 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.7295 2.2541 -0.8419 25 1 4.0784 1.4893 -1.0571 26 1 4.2296 1.4546 0.7161 27 1 3.5886 3.9182 -0.9684 28 1 5.1604 3.5557 -0.2155 29 1 3.8465 5.1287 1.1800 30 1 3.8087 2.5424 2.5491 31 1 4.8816 5.2046 3.2198 32 1 3.3111 4.5795 3.7775 33 1 4.4620 2.6903 4.8984 34 1 6.0322 3.3159 4.3403 35 1 5.6374 5.4204 5.5914 36 1 4.0674 4.7942 6.1491 37 1 5.6212 6.1468 9.2017 38 1 1.7452 4.3454 2.2374 39 1 1.5943 4.3791 0.4644 40 1 0.6635 2.2779 1.3968 41 1 2.2354 1.9150 2.1491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235022543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:28 Heat of formation + Delta-G solvation = -36.457213 kcal Electronic energy + Delta-G solvation = -17255.609491 eV Core-core repulsion = 14680.992441 eV Total energy + Delta-G solvation = -2574.617050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34161 -35.25369 -33.20205 -31.38231 -31.06203 -29.18476 -28.81938 -25.75297 -22.88341 -22.67420 -22.35086 -20.10064 -19.04047 -16.76962 -16.40070 -15.94276 -15.03509 -14.83862 -14.47023 -14.34776 -14.12863 -13.81873 -13.67280 -13.41434 -12.99660 -12.43387 -12.39077 -12.22323 -11.95226 -11.67946 -11.46885 -11.23366 -10.91388 -10.79928 -10.70409 -10.53281 -10.38800 -10.36226 -9.83300 -9.65439 -9.28801 -9.02638 -8.31116 -8.09177 -7.88765 -5.96534 -3.98480 1.47900 2.37112 3.36273 3.40049 3.43169 4.35935 4.44420 4.48742 4.57860 4.77047 4.85044 4.89123 5.00550 5.08317 5.23476 5.27777 5.32502 5.39176 5.40097 5.51337 5.65102 5.75144 5.82971 5.93630 5.96298 5.98090 6.05005 6.21140 6.27263 6.37183 6.76804 6.82897 7.17919 7.41403 7.69348 7.72245 7.87493 8.04115 8.47715 9.08649 9.65365 11.14913 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.003585 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.576741 B = 7808.058603 C = 8223.373957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.269 6.269 3 C -0.046 4.046 4 C -0.098 4.098 5 C -0.100 4.100 6 C 0.084 3.916 7 N -0.684 5.684 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.148 4.148 20 C -0.115 4.115 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.338 0.662 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -6.399 -19.582 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.040 6.040 3 C -0.174 4.174 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.027 4.027 7 N -0.317 5.317 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.189 4.189 20 C -0.155 4.155 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.528 -7.032 -19.678 22.570 hybrid contribution -1.495 0.617 1.175 1.999 sum -10.023 -6.414 -18.503 21.999 Atomic orbital electron populations 1.23373 0.94627 1.06270 1.04781 1.86944 1.06964 1.12170 1.97901 1.23234 1.00934 0.92477 1.00779 1.21326 0.91474 0.97625 1.03301 1.21525 1.01884 0.94211 0.96304 1.21562 0.90554 0.98660 0.91920 1.60734 1.56711 1.07340 1.06878 1.22149 0.98656 0.96044 0.90145 1.21621 0.99366 0.98961 0.94591 1.19053 0.96911 0.94462 0.91050 1.21234 1.37514 1.00130 0.96844 0.92719 1.25027 0.95832 0.94910 0.98744 1.69957 1.46954 1.11616 1.25174 0.86658 0.80193 0.79441 0.81718 1.20205 1.21330 1.20265 1.22240 0.98447 0.95716 1.02470 1.21862 1.00785 0.96064 0.96740 0.90446 0.90772 0.88296 0.89845 0.91410 0.89993 0.92134 0.90561 0.90346 0.84135 0.91578 0.95886 0.93781 0.92567 0.96627 0.96898 0.93015 0.91356 0.91679 0.92017 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.45 101.05 1.06 0.13 16 2 S -0.27 -2.80 21.79 -107.50 -2.34 -5.14 16 3 C -0.05 -0.44 2.65 -26.73 -0.07 -0.51 16 4 C -0.10 -0.99 4.97 -26.73 -0.13 -1.13 16 5 C -0.10 -0.99 5.64 -26.73 -0.15 -1.14 16 6 C 0.08 0.96 2.85 -67.71 -0.19 0.77 16 7 N -0.68 -9.76 5.77 -106.72 -0.62 -10.37 16 8 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 9 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.15 -1.52 5.52 -26.70 -0.15 -1.67 16 20 C -0.12 -1.15 4.86 -26.71 -0.13 -1.28 16 21 H 0.08 0.57 7.14 -51.92 -0.37 0.20 16 22 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 23 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 24 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.96 7.21 -51.93 -0.37 0.59 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.94 7.80 -51.93 -0.41 0.53 16 30 H 0.34 4.75 5.56 -39.29 -0.22 4.53 16 31 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.78 7.46 -51.92 -0.39 0.40 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 41 H 0.08 0.90 6.26 -51.93 -0.32 0.57 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -30.01 328.54 -10.21 -40.23 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.44 Total: -0.45 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.48 Total: -19.57 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.12 Total: -37.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.34 Total: -5.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.01 -10.21 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235022543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.769 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds