Wall clock time and date at job start Mon Mar 30 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00177 * 2 1 4 4 C 1.52997 * 109.47367 * 185.00195 * 3 2 1 5 5 C 1.53003 * 109.47371 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46985 * 59.99890 * 5 4 3 7 7 N 1.46901 * 109.47187 * 59.99819 * 6 5 4 8 8 C 1.46905 * 110.99870 * 154.99992 * 7 6 5 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47360 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00108 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46845 * 60.00484 * 15 13 11 17 17 H 1.48498 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47227 * 300.00326 * 15 13 11 19 19 C 1.53003 * 109.46931 * 300.00020 * 6 5 4 20 20 C 1.52996 * 109.47321 * 64.99541 * 3 2 1 21 21 H 1.09000 * 109.47101 * 300.00038 * 1 2 3 22 22 H 1.09003 * 109.47119 * 60.00205 * 1 2 3 23 23 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47120 * 304.99788 * 3 2 1 25 25 H 1.08998 * 109.47168 * 59.99375 * 4 3 2 26 26 H 1.09002 * 109.47046 * 299.99541 * 4 3 2 27 27 H 1.08993 * 109.47138 * 299.99887 * 5 4 3 28 28 H 1.08995 * 109.47280 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47284 * 180.02562 * 6 5 4 30 30 H 1.00901 * 111.00067 * 278.95167 * 7 6 5 31 31 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 32 32 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 33 33 H 1.09001 * 109.47393 * 299.99719 * 9 8 7 34 34 H 1.08998 * 109.47408 * 60.00073 * 9 8 7 35 35 H 1.09001 * 109.46514 * 300.00105 * 10 9 8 36 36 H 1.08998 * 109.46924 * 59.99625 * 10 9 8 37 37 H 0.97004 * 119.99990 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47106 * 180.02562 * 19 6 5 39 39 H 1.08993 * 109.47190 * 300.00002 * 19 6 5 40 40 H 1.09001 * 109.47486 * 300.00169 * 20 3 2 41 41 H 1.09002 * 109.46901 * 60.00575 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7369 1.9411 -0.1258 5 6 4.0811 3.4320 -0.1264 6 6 3.6018 4.0666 1.1807 7 7 4.2656 3.4112 2.3155 8 6 4.3231 4.3054 3.4797 9 6 5.0202 3.5897 4.6384 10 6 5.0796 4.5207 5.8511 11 6 5.7656 3.8156 6.9927 12 1 6.1238 2.8046 6.8658 13 6 5.9368 4.4614 8.1987 14 7 5.5010 5.6926 8.3530 15 14 6.7865 3.5871 9.6140 16 1 8.1652 3.2131 9.2085 17 1 6.8442 4.4908 10.7910 18 1 6.0252 2.3622 9.9678 19 6 2.0869 3.8929 1.3063 20 6 1.7428 2.4016 1.3072 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.7295 2.2541 -0.8419 25 1 4.0784 1.4893 -1.0571 26 1 4.2296 1.4546 0.7161 27 1 3.5886 3.9182 -0.9684 28 1 5.1604 3.5557 -0.2155 29 1 3.8465 5.1287 1.1800 30 1 3.8087 2.5424 2.5491 31 1 4.8816 5.2046 3.2198 32 1 3.3111 4.5795 3.7775 33 1 4.4620 2.6903 4.8984 34 1 6.0322 3.3159 4.3403 35 1 5.6374 5.4204 5.5914 36 1 4.0674 4.7942 6.1491 37 1 5.6212 6.1468 9.2017 38 1 1.7452 4.3454 2.2374 39 1 1.5943 4.3791 0.4644 40 1 0.6635 2.2779 1.3968 41 1 2.2354 1.9150 2.1491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235022543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:28 Heat of formation + Delta-G solvation = -53.089056 kcal Electronic energy + Delta-G solvation = -17256.330701 eV Core-core repulsion = 14680.992441 eV Total energy + Delta-G solvation = -2575.338261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27296 -36.76047 -35.03385 -32.98634 -31.90443 -30.33325 -29.59678 -27.56329 -24.38521 -23.60722 -23.41893 -21.87013 -19.95997 -18.49832 -17.55872 -17.14725 -16.56195 -16.08630 -15.83990 -15.31150 -15.25037 -14.78273 -14.44994 -14.37752 -14.07759 -13.96027 -13.74650 -13.27773 -13.21800 -13.02964 -12.78306 -12.67296 -12.45291 -12.29976 -12.09707 -11.74561 -11.55255 -11.50296 -11.34627 -11.18784 -11.00350 -10.60374 -10.55007 -9.26027 -8.68408 -8.20257 -6.31387 0.76724 1.39750 1.43128 1.51062 1.68136 2.41078 3.12641 3.28963 3.64808 3.70328 3.91474 4.15866 4.21897 4.26339 4.31820 4.34427 4.37014 4.47384 4.48419 4.52574 4.66761 4.74938 4.85162 4.87078 4.90225 5.04924 5.07688 5.11712 5.17721 5.22564 5.24495 5.38820 5.45404 5.52605 5.75493 5.85797 6.15334 6.29176 6.53466 6.85310 7.37803 8.91469 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.003585 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.576741 B = 7808.058603 C = 8223.373957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.319 6.319 3 C -0.032 4.032 4 C -0.095 4.095 5 C -0.092 4.092 6 C 0.080 3.920 7 N -0.685 5.685 8 C 0.073 3.927 9 C -0.093 4.093 10 C 0.027 3.973 11 C -0.545 4.545 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.141 4.141 20 C -0.111 4.111 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.340 0.660 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.045 0.955 34 H 0.051 0.949 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -7.129 -20.524 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.091 6.091 3 C -0.160 4.160 4 C -0.134 4.134 5 C -0.132 4.132 6 C -0.030 4.030 7 N -0.318 5.318 8 C -0.056 4.056 9 C -0.131 4.131 10 C -0.011 4.011 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.182 4.182 20 C -0.151 4.151 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.126 0.874 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.104 -7.771 -20.642 23.861 hybrid contribution -1.353 0.852 1.435 2.149 sum -10.457 -6.919 -19.207 22.937 Atomic orbital electron populations 1.23412 0.91675 1.07186 1.05621 1.87141 1.10347 1.13604 1.97999 1.23145 1.00461 0.91538 1.00884 1.21275 0.91873 0.97518 1.02733 1.21479 1.01715 0.94070 0.95941 1.21675 0.91419 0.98441 0.91425 1.60679 1.57799 1.07035 1.06300 1.21829 0.97901 0.95818 0.90040 1.21378 0.99673 0.98075 0.93993 1.18951 0.94812 0.94470 0.92835 1.21683 1.38012 1.00583 0.98061 0.92372 1.25989 0.96412 0.95656 1.01783 1.70088 1.47987 1.13198 1.26116 0.85500 0.79246 0.78404 0.77910 1.19180 1.20669 1.19173 1.22168 0.97387 0.95966 1.02707 1.21814 1.01239 0.95632 0.96385 0.90096 0.89364 0.87412 0.88299 0.90796 0.92053 0.89773 0.91212 0.90597 0.83913 0.92013 0.96016 0.93585 0.93042 0.99015 0.99139 0.92736 0.92689 0.89510 0.90984 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.45 113.37 1.18 -0.26 16 2 S -0.32 -6.27 21.79 -56.49 -1.23 -7.50 16 3 C -0.03 -0.55 2.65 30.59 0.08 -0.47 16 4 C -0.10 -1.78 4.97 30.59 0.15 -1.63 16 5 C -0.09 -1.65 5.64 30.60 0.17 -1.48 16 6 C 0.08 1.74 2.85 44.92 0.13 1.87 16 7 N -0.69 -19.25 5.77 -491.56 -2.83 -22.08 16 8 C 0.07 2.54 5.48 86.30 0.47 3.02 16 9 C -0.09 -3.99 5.41 30.59 0.17 -3.82 16 10 C 0.03 1.46 4.97 29.85 0.15 1.61 16 11 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 15 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.14 -2.65 5.52 30.61 0.17 -2.48 16 20 C -0.11 -2.04 4.86 30.61 0.15 -1.89 16 21 H 0.08 1.01 7.14 -2.39 -0.02 0.99 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.41 7.21 -2.39 -0.02 1.39 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 30 H 0.34 9.47 5.56 -89.69 -0.50 8.97 16 31 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 32 H 0.02 0.75 7.44 -2.39 -0.02 0.74 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.05 1.19 7.46 -2.38 -0.02 1.18 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.18 6.92 -2.39 -0.02 1.17 16 41 H 0.06 1.32 6.26 -2.39 -0.01 1.31 16 Total: -1.00 -64.75 328.54 2.24 -62.51 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.48 Total: 14.34 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.52 Total: -36.88 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.55 Total: -79.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.23 Total: -7.50 kcal Total: -64.75 2.24 -62.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235022543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.422 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds