Wall clock time and date at job start Mon Mar 30 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99894 * 2 1 4 4 C 1.52999 * 109.47210 * 184.87719 * 3 2 1 5 5 N 1.46907 * 109.47079 * 54.76008 * 4 3 2 6 6 C 1.46897 * 110.99619 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46893 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47438 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99581 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00356 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00319 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00087 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47218 * 89.99806 * 12 10 8 14 14 H 1.48496 * 109.47086 * 210.00308 * 12 10 8 15 15 H 1.48503 * 109.46652 * 329.99985 * 12 10 8 16 16 C 1.53005 * 109.46876 * 304.87502 * 3 2 1 17 17 C 1.53001 * 109.46985 * 180.02562 * 16 3 2 18 18 C 1.53005 * 109.46766 * 299.99448 * 17 16 3 19 19 C 1.52996 * 109.47023 * 60.00467 * 18 17 16 20 20 C 1.52994 * 109.47602 * 64.87371 * 3 2 1 21 21 H 1.08997 * 109.47123 * 305.05677 * 1 2 3 22 22 H 1.08997 * 109.46948 * 65.06007 * 1 2 3 23 23 H 1.09002 * 109.46927 * 185.05939 * 1 2 3 24 24 H 1.08996 * 109.47169 * 294.76019 * 4 3 2 25 25 H 1.09000 * 109.47231 * 174.76242 * 4 3 2 26 26 H 1.00897 * 110.99786 * 56.05251 * 5 4 3 27 27 H 1.09005 * 109.47284 * 299.99876 * 6 5 4 28 28 H 1.09002 * 109.47376 * 60.00323 * 6 5 4 29 29 H 1.08992 * 109.47299 * 300.00296 * 7 6 5 30 30 H 1.09005 * 109.47314 * 60.00030 * 7 6 5 31 31 H 0.96997 * 120.00383 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46927 * 300.00184 * 16 3 2 33 33 H 1.09000 * 109.46937 * 60.00029 * 16 3 2 34 34 H 1.09000 * 109.46604 * 180.02562 * 17 16 3 35 35 H 1.08992 * 109.47393 * 59.99889 * 17 16 3 36 36 H 1.09000 * 109.47405 * 300.00689 * 18 17 16 37 37 H 1.09004 * 109.47083 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47554 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.47280 * 59.99776 * 19 18 17 40 40 H 1.09000 * 109.47105 * 300.00518 * 20 3 2 41 41 H 1.09001 * 109.46935 * 60.00036 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7372 1.9412 -0.1226 5 7 4.2176 1.2245 -1.3117 6 6 5.6717 1.3689 -1.4615 7 6 6.1338 0.6103 -2.7073 8 6 7.6256 0.7589 -2.8615 9 1 8.1879 1.3363 -2.1425 10 6 8.2725 0.1578 -3.9202 11 7 9.5743 0.2870 -4.0545 12 14 7.2998 -0.8403 -5.1642 13 1 6.8481 0.0468 -6.2661 14 1 8.1605 -1.9169 -5.7166 15 1 6.1176 -1.4441 -4.4985 16 6 1.5330 2.4500 -1.1835 17 6 1.8777 3.9406 -1.1839 18 6 1.3959 4.5757 0.1221 19 6 2.0849 3.8934 1.3055 20 6 1.7400 2.4023 1.3059 21 1 -0.3633 0.5903 0.8412 22 1 -0.3633 0.4333 -0.9318 23 1 -0.3633 -1.0237 0.0906 24 1 4.2223 1.5371 0.7658 25 1 3.9751 3.0008 -0.2162 26 1 3.7355 1.5367 -2.1413 27 1 5.9234 2.4245 -1.5642 28 1 6.1700 0.9605 -0.5823 29 1 5.8822 -0.4451 -2.6042 30 1 5.6356 1.0183 -3.5868 31 1 10.0294 -0.1355 -4.7996 32 1 1.8765 1.9977 -2.1139 33 1 0.4536 2.3262 -1.0961 34 1 1.3865 4.4268 -2.0267 35 1 2.9571 4.0640 -1.2714 36 1 0.3165 4.4523 0.2097 37 1 1.6411 5.6379 0.1217 38 1 1.7421 4.3461 2.2360 39 1 3.1644 4.0168 1.2180 40 1 0.6606 2.2786 1.3933 41 1 2.2308 1.9162 2.1490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235105384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:24 Heat of formation + Delta-G solvation = -26.675239 kcal Electronic energy + Delta-G solvation = -17796.023009 eV Core-core repulsion = 15221.830137 eV Total energy + Delta-G solvation = -2574.192872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.47547 -35.61112 -32.94078 -31.53858 -31.05208 -29.72604 -28.57196 -25.46190 -23.36074 -22.72214 -22.17663 -20.35792 -18.68523 -16.87974 -16.69564 -15.51555 -15.17255 -14.87719 -14.60185 -14.13808 -14.04367 -13.76772 -13.37162 -13.21224 -12.95927 -12.72913 -12.46355 -12.35121 -12.19545 -11.80481 -11.36507 -11.31324 -11.15918 -10.97321 -10.84587 -10.50204 -10.30252 -10.00958 -9.79298 -9.67650 -9.40783 -9.17692 -8.49164 -7.87109 -7.38168 -6.00233 -3.98264 1.80116 2.71149 3.35964 3.43531 3.51282 4.35681 4.47396 4.50987 4.64710 4.80387 4.88635 4.99099 5.04384 5.11758 5.15933 5.25819 5.31782 5.34800 5.43464 5.47963 5.60473 5.70889 5.78226 5.83319 5.84446 5.91426 5.93556 6.06048 6.15014 6.23215 6.26719 6.33066 6.82916 7.18723 7.43710 7.67243 7.81032 7.96442 8.57657 9.03914 9.62609 11.13166 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.004940 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.549070 B = 5666.968053 C = 6142.241194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.205 6.205 3 C -0.023 4.023 4 C 0.079 3.921 5 N -0.683 5.683 6 C 0.075 3.925 7 C -0.009 4.009 8 C -0.520 4.520 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.262 1.262 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.335 0.665 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.041 6.493 9.639 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.025 5.975 3 C -0.133 4.133 4 C -0.051 4.051 5 N -0.315 5.315 6 C -0.053 4.053 7 C -0.046 4.046 8 C -0.558 4.558 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.544 5.544 12 Si 0.707 3.293 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.186 1.186 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.146 4.146 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.113 0.887 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.158 4.872 9.849 22.958 hybrid contribution -1.157 1.431 -1.026 2.107 sum -21.315 6.303 8.823 23.914 Atomic orbital electron populations 1.23499 0.97615 1.05713 1.04207 1.87441 1.03090 1.09429 1.97532 1.22820 0.99148 0.93631 0.97742 1.21841 0.90533 0.96744 0.96017 1.60618 1.06548 1.59528 1.04797 1.21940 0.84798 0.97926 1.00658 1.19529 0.96573 0.96365 0.92179 1.21081 0.90801 1.32732 1.11224 0.91189 1.24994 0.94739 0.95963 0.97689 1.69916 1.08180 1.45026 1.31326 0.86762 0.80576 0.80300 0.81630 1.20455 1.21468 1.18603 1.21897 0.99872 0.95466 0.97976 1.21640 1.01917 0.94997 0.97533 1.21529 0.99974 0.99323 0.94756 1.21628 1.01329 0.94839 0.98167 1.21853 1.00883 0.95631 0.96232 0.91236 0.90939 0.88690 0.90731 0.93738 0.84693 0.96276 0.91809 0.95516 0.97417 0.92782 0.90358 0.91998 0.91763 0.91298 0.92299 0.91980 0.91873 0.91283 0.92010 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.79 101.05 0.99 -0.37 16 2 S -0.21 -2.74 20.72 -107.50 -2.23 -4.97 16 3 C -0.02 -0.27 0.51 -90.62 -0.05 -0.31 16 4 C 0.08 1.10 3.94 -3.82 -0.02 1.09 16 5 N -0.68 -11.69 5.85 -113.78 -0.67 -12.36 16 6 C 0.07 1.54 5.62 -3.82 -0.02 1.52 16 7 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 8 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 9 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 10 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 11 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 12 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 16 C -0.11 -1.19 4.28 -26.73 -0.11 -1.31 16 17 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 18 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 19 C -0.12 -1.05 5.65 -26.71 -0.15 -1.20 16 20 C -0.11 -1.03 4.64 -26.71 -0.12 -1.15 16 21 H 0.07 0.58 6.92 -51.93 -0.36 0.22 16 22 H 0.07 0.65 7.19 -51.93 -0.37 0.28 16 23 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.59 4.83 -51.93 -0.25 0.34 16 26 H 0.33 5.49 7.00 -39.29 -0.27 5.22 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.08 0.93 6.68 -51.93 -0.35 0.58 16 33 H 0.06 0.60 6.64 -51.93 -0.35 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.66 6.55 -51.93 -0.34 0.32 16 40 H 0.06 0.55 6.79 -51.93 -0.35 0.20 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -30.95 317.43 -9.47 -40.42 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.13 Total: 0.24 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.34 Total: -18.13 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.11 Total: -40.00 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.23 Total: -4.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.95 -9.47 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235105384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.748 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds