Wall clock time and date at job start Mon Mar 30 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99894 * 2 1 4 4 C 1.52999 * 109.47210 * 184.87719 * 3 2 1 5 5 N 1.46907 * 109.47079 * 54.76008 * 4 3 2 6 6 C 1.46897 * 110.99619 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46893 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47438 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99581 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00356 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00319 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00087 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47218 * 89.99806 * 12 10 8 14 14 H 1.48496 * 109.47086 * 210.00308 * 12 10 8 15 15 H 1.48503 * 109.46652 * 329.99985 * 12 10 8 16 16 C 1.53005 * 109.46876 * 304.87502 * 3 2 1 17 17 C 1.53001 * 109.46985 * 180.02562 * 16 3 2 18 18 C 1.53005 * 109.46766 * 299.99448 * 17 16 3 19 19 C 1.52996 * 109.47023 * 60.00467 * 18 17 16 20 20 C 1.52994 * 109.47602 * 64.87371 * 3 2 1 21 21 H 1.08997 * 109.47123 * 305.05677 * 1 2 3 22 22 H 1.08997 * 109.46948 * 65.06007 * 1 2 3 23 23 H 1.09002 * 109.46927 * 185.05939 * 1 2 3 24 24 H 1.08996 * 109.47169 * 294.76019 * 4 3 2 25 25 H 1.09000 * 109.47231 * 174.76242 * 4 3 2 26 26 H 1.00897 * 110.99786 * 56.05251 * 5 4 3 27 27 H 1.09005 * 109.47284 * 299.99876 * 6 5 4 28 28 H 1.09002 * 109.47376 * 60.00323 * 6 5 4 29 29 H 1.08992 * 109.47299 * 300.00296 * 7 6 5 30 30 H 1.09005 * 109.47314 * 60.00030 * 7 6 5 31 31 H 0.96997 * 120.00383 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46927 * 300.00184 * 16 3 2 33 33 H 1.09000 * 109.46937 * 60.00029 * 16 3 2 34 34 H 1.09000 * 109.46604 * 180.02562 * 17 16 3 35 35 H 1.08992 * 109.47393 * 59.99889 * 17 16 3 36 36 H 1.09000 * 109.47405 * 300.00689 * 18 17 16 37 37 H 1.09004 * 109.47083 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47554 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.47280 * 59.99776 * 19 18 17 40 40 H 1.09000 * 109.47105 * 300.00518 * 20 3 2 41 41 H 1.09001 * 109.46935 * 60.00036 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7372 1.9412 -0.1226 5 7 4.2176 1.2245 -1.3117 6 6 5.6717 1.3689 -1.4615 7 6 6.1338 0.6103 -2.7073 8 6 7.6256 0.7589 -2.8615 9 1 8.1879 1.3363 -2.1425 10 6 8.2725 0.1578 -3.9202 11 7 9.5743 0.2870 -4.0545 12 14 7.2998 -0.8403 -5.1642 13 1 6.8481 0.0468 -6.2661 14 1 8.1605 -1.9169 -5.7166 15 1 6.1176 -1.4441 -4.4985 16 6 1.5330 2.4500 -1.1835 17 6 1.8777 3.9406 -1.1839 18 6 1.3959 4.5757 0.1221 19 6 2.0849 3.8934 1.3055 20 6 1.7400 2.4023 1.3059 21 1 -0.3633 0.5903 0.8412 22 1 -0.3633 0.4333 -0.9318 23 1 -0.3633 -1.0237 0.0906 24 1 4.2223 1.5371 0.7658 25 1 3.9751 3.0008 -0.2162 26 1 3.7355 1.5367 -2.1413 27 1 5.9234 2.4245 -1.5642 28 1 6.1700 0.9605 -0.5823 29 1 5.8822 -0.4451 -2.6042 30 1 5.6356 1.0183 -3.5868 31 1 10.0294 -0.1355 -4.7996 32 1 1.8765 1.9977 -2.1139 33 1 0.4536 2.3262 -1.0961 34 1 1.3865 4.4268 -2.0267 35 1 2.9571 4.0640 -1.2714 36 1 0.3165 4.4523 0.2097 37 1 1.6411 5.6379 0.1217 38 1 1.7421 4.3461 2.2360 39 1 3.1644 4.0168 1.2180 40 1 0.6606 2.2786 1.3933 41 1 2.2308 1.9162 2.1490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235105384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:23 Heat of formation + Delta-G solvation = -45.463119 kcal Electronic energy + Delta-G solvation = -17796.837712 eV Core-core repulsion = 15221.830137 eV Total energy + Delta-G solvation = -2575.007575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37321 -37.08704 -34.93973 -32.86457 -31.85923 -31.13092 -29.55089 -26.96022 -24.83189 -23.61264 -23.02872 -22.22220 -19.60414 -18.95498 -17.82955 -16.67062 -16.41613 -16.21600 -15.79335 -15.43248 -15.17461 -14.79553 -14.64601 -14.34435 -14.30183 -14.01649 -13.62379 -13.40422 -13.16511 -13.08731 -12.91316 -12.56870 -12.30482 -12.06236 -11.93205 -11.78046 -11.66804 -11.60543 -11.42396 -11.16107 -11.06492 -10.77025 -10.31371 -9.24812 -8.42758 -8.30330 -6.34695 0.89173 1.35568 1.38874 1.52535 1.84465 2.36801 3.05375 3.25072 3.64532 3.64943 3.97167 4.08057 4.23255 4.27821 4.33495 4.37103 4.42150 4.47227 4.50971 4.56734 4.61230 4.70105 4.74495 4.82673 4.95822 4.96873 5.05019 5.09121 5.16972 5.21166 5.28119 5.32628 5.38235 5.48403 5.50813 5.63803 6.13410 6.25318 6.53644 6.73712 7.30378 8.86413 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.004940 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.549070 B = 5666.968053 C = 6142.241194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.283 6.283 3 C -0.006 4.006 4 C 0.081 3.919 5 N -0.683 5.683 6 C 0.090 3.910 7 C -0.001 4.001 8 C -0.533 4.533 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.952 3.048 13 H -0.264 1.264 14 H -0.283 1.283 15 H -0.251 1.251 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.101 4.101 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.341 0.659 27 H 0.017 0.983 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.129 6.912 9.419 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.053 6.053 3 C -0.116 4.116 4 C -0.049 4.049 5 N -0.315 5.315 6 C -0.039 4.039 7 C -0.039 4.039 8 C -0.572 4.572 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.775 3.225 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.175 1.175 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.141 4.141 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.160 0.840 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.265 5.305 9.644 25.737 hybrid contribution -0.174 1.340 -0.883 1.614 sum -23.439 6.645 8.762 25.890 Atomic orbital electron populations 1.23476 0.93485 1.06701 1.05340 1.87668 1.07812 1.12031 1.97755 1.22728 0.97169 0.92233 0.99492 1.21869 0.92432 0.96692 0.93945 1.60509 1.04254 1.60607 1.06177 1.21586 0.87128 0.96999 0.98221 1.19395 0.93660 0.96456 0.94393 1.21404 0.93142 1.32151 1.10485 0.94991 1.25966 0.95761 0.97211 1.00016 1.70059 1.10147 1.46421 1.32492 0.85625 0.79173 0.78739 0.78917 1.18872 1.20876 1.17461 1.21871 1.00579 0.95801 0.96589 1.21634 1.01015 0.94444 0.98881 1.21518 1.00599 0.99554 0.93526 1.21631 1.00722 0.94178 0.99305 1.21826 1.01611 0.96008 0.94658 0.89610 0.90066 0.87922 0.92012 0.92800 0.84032 0.96454 0.93124 0.96266 0.96414 0.92416 0.91864 0.90432 0.90727 0.92942 0.90995 0.91170 0.90246 0.92496 0.90502 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.79 113.37 1.11 -0.89 16 2 S -0.28 -7.25 20.72 -56.49 -1.17 -8.42 16 3 C -0.01 -0.14 0.51 -10.79 -0.01 -0.14 16 4 C 0.08 2.21 3.94 86.30 0.34 2.55 16 5 N -0.68 -23.19 5.85 -513.87 -3.00 -26.20 16 6 C 0.09 3.73 5.62 86.30 0.49 4.22 16 7 C 0.00 -0.06 4.30 29.85 0.13 0.07 16 8 C -0.53 -31.86 9.66 25.60 0.25 -31.62 16 9 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 10 C 0.01 0.44 5.47 84.65 0.46 0.91 16 11 N -0.95 -60.90 13.96 21.44 0.30 -60.60 16 12 Si 0.95 45.88 27.47 68.60 1.88 47.77 16 13 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 15 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 16 C -0.11 -2.07 4.28 30.60 0.13 -1.94 16 17 C -0.12 -2.04 5.65 30.60 0.17 -1.87 16 18 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 19 C -0.12 -1.79 5.65 30.61 0.17 -1.62 16 20 C -0.10 -1.74 4.64 30.61 0.14 -1.60 16 21 H 0.09 1.14 6.92 -2.39 -0.02 1.13 16 22 H 0.08 1.21 7.19 -2.39 -0.02 1.19 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.40 4.83 -2.39 -0.01 1.39 16 26 H 0.34 10.91 7.00 -89.70 -0.63 10.28 16 27 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 30 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.06 1.40 6.68 -2.39 -0.02 1.38 16 33 H 0.08 1.24 6.64 -2.39 -0.02 1.23 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.06 6.32 -2.39 -0.02 1.05 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.00 6.55 -2.38 -0.02 0.98 16 40 H 0.08 1.12 6.79 -2.39 -0.02 1.10 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -67.60 317.43 1.89 -65.71 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.31 Total: 15.05 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.57 Total: -33.31 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.70 Total: -86.80 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.77 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -1.17 Total: -8.42 kcal Total: -67.60 1.89 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235105384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.245 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds