Wall clock time and date at job start Mon Mar 30 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81405 * 102.99882 * 2 1 4 4 C 1.53005 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47107 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47107 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47125 * 184.85919 * 7 6 5 9 9 C 1.46901 * 110.99927 * 184.29952 * 8 7 6 10 10 C 1.52995 * 109.47336 * 185.66354 * 9 8 7 11 11 C 1.50695 * 115.55145 * 304.98740 * 10 9 8 12 12 H 1.08008 * 119.99747 * 274.71523 * 11 10 9 13 13 C 1.37879 * 120.00453 * 94.43560 * 11 10 9 14 14 N 1.31509 * 120.00172 * 180.29457 * 13 11 10 15 15 Si 1.86800 * 119.99804 * 0.29435 * 13 11 10 16 16 H 1.48497 * 109.47205 * 94.25437 * 15 13 11 17 17 H 1.48496 * 109.47468 * 214.26027 * 15 13 11 18 18 H 1.48505 * 109.47075 * 334.25599 * 15 13 11 19 19 C 1.53008 * 117.49752 * 90.65245 * 10 9 8 20 20 C 1.53000 * 117.50141 * 159.31389 * 10 9 8 21 21 H 1.09001 * 109.47593 * 60.00165 * 1 2 3 22 22 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47289 * 299.99634 * 1 2 3 24 24 H 1.09003 * 109.46895 * 60.00549 * 3 2 1 25 25 H 1.08995 * 109.47065 * 300.00063 * 3 2 1 26 26 H 1.09002 * 109.47386 * 60.00472 * 4 3 2 27 27 H 1.09002 * 109.47199 * 300.00337 * 4 3 2 28 28 H 1.09002 * 109.46786 * 59.99924 * 5 4 3 29 29 H 1.08997 * 109.47353 * 300.00613 * 5 4 3 30 30 H 1.09002 * 109.47229 * 60.00356 * 6 5 4 31 31 H 1.08995 * 109.47440 * 299.99843 * 6 5 4 32 32 H 1.08997 * 109.47272 * 64.85717 * 7 6 5 33 33 H 1.09002 * 109.46883 * 304.85932 * 7 6 5 34 34 H 1.00897 * 110.99617 * 308.24947 * 8 7 6 35 35 H 1.08997 * 109.47366 * 65.65796 * 9 8 7 36 36 H 1.09001 * 109.46829 * 305.66346 * 9 8 7 37 37 H 0.97005 * 120.00308 * 180.02562 * 14 13 11 38 38 H 1.09000 * 117.49507 * 215.00248 * 19 10 9 39 39 H 1.08997 * 117.50070 * 0.02750 * 19 10 9 40 40 H 1.09007 * 117.49514 * 359.97438 * 20 10 9 41 41 H 1.09000 * 117.50152 * 144.97761 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0864 3.4308 0.0013 6 6 5.6066 3.6032 0.0026 7 6 5.9508 5.0940 0.0039 8 7 7.4057 5.2608 -0.1122 9 6 7.7829 6.6770 -0.0119 10 6 9.2823 6.8255 -0.2774 11 6 10.1826 5.9865 0.5924 12 1 10.4855 6.3487 1.5638 13 6 10.6149 4.7540 0.1507 14 7 11.3958 4.0193 0.9122 15 14 10.0912 4.1277 -1.5295 16 1 11.1299 4.4741 -2.5327 17 1 9.9247 2.6530 -1.4783 18 1 8.8027 4.7583 -1.9133 19 6 9.7232 7.0697 -1.7220 20 6 9.7921 8.2054 -0.6979 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8031 2.2371 0.8901 25 1 1.8030 2.2371 -0.8899 26 1 4.1616 1.4704 -0.8891 27 1 4.1608 1.4704 0.8908 28 1 3.6671 3.9001 0.8913 29 1 3.6678 3.9008 -0.8886 30 1 6.0263 3.1339 -0.8872 31 1 6.0248 3.1335 0.8927 32 1 5.6064 5.5457 0.9342 33 1 5.4608 5.5807 -0.8395 34 1 7.8893 4.7079 0.5795 35 1 7.5528 7.0444 0.9881 36 1 7.2246 7.2547 -0.7486 37 1 11.7003 3.1524 0.6013 38 1 10.6645 6.6236 -2.0432 39 1 8.9451 7.1251 -2.4832 40 1 9.0591 9.0074 -0.7858 41 1 10.7785 8.5065 -0.3451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235134218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:32 Heat of formation + Delta-G solvation = 4.540430 kcal Electronic energy + Delta-G solvation = -16921.966437 eV Core-core repulsion = 14349.127178 eV Total energy + Delta-G solvation = -2572.839259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.51605 -36.33189 -34.18327 -31.98095 -30.69267 -29.27639 -26.61585 -25.31738 -23.58650 -21.64501 -21.29382 -21.01614 -18.74238 -16.44525 -16.18741 -16.10762 -15.15748 -14.77084 -14.52444 -14.30222 -13.93547 -13.78269 -13.74775 -13.40205 -12.80242 -12.54592 -12.38682 -12.13572 -11.92443 -11.58362 -11.14488 -11.08160 -10.91844 -10.67779 -10.51333 -10.41407 -10.24295 -10.20400 -9.81704 -9.36364 -8.93264 -8.51553 -8.38778 -7.97928 -7.37925 -6.00144 -4.07021 1.38326 2.31031 3.49961 3.61263 3.90427 4.47471 4.63789 4.67080 4.77152 4.77725 4.83891 5.03193 5.10955 5.20097 5.30961 5.32296 5.36593 5.51016 5.60808 5.73900 5.85174 5.87753 5.94556 6.01906 6.10118 6.16855 6.25903 6.41216 6.44494 6.49991 6.57940 6.60036 6.81861 7.13259 7.20409 7.83378 7.93166 8.23747 8.57535 8.99240 9.63809 11.09646 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.003588 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.998312 B = 7801.612335 C = 8278.929401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.272 6.272 3 C -0.080 4.080 4 C -0.105 4.105 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.059 3.941 8 N -0.679 5.679 9 C 0.103 3.897 10 C 0.009 3.991 11 C -0.496 4.496 12 H 0.072 0.928 13 C 0.080 3.920 14 N -0.903 5.903 15 Si 0.873 3.127 16 H -0.298 1.298 17 H -0.305 1.305 18 H -0.207 1.207 19 C -0.194 4.194 20 C -0.188 4.188 21 H 0.075 0.925 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.354 0.646 35 H 0.021 0.979 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 -3.258 -2.680 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.046 6.046 3 C -0.229 4.229 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.071 4.071 8 N -0.312 5.312 9 C -0.026 4.026 10 C 0.008 3.992 11 C -0.533 4.533 12 H 0.090 0.910 13 C -0.122 4.122 14 N -0.540 5.540 15 Si 0.701 3.299 16 H -0.226 1.226 17 H -0.233 1.233 18 H -0.129 1.129 19 C -0.231 4.231 20 C -0.226 4.226 21 H 0.094 0.906 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.175 0.825 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.735 -4.315 -3.333 20.474 hybrid contribution -1.029 0.724 0.098 1.262 sum -20.764 -3.591 -3.234 21.319 Atomic orbital electron populations 1.23358 0.94456 1.06412 1.04788 1.87051 1.07074 1.12376 1.98071 1.23463 1.01161 0.93443 1.04797 1.21370 0.91681 0.97606 1.03720 1.21516 0.96723 0.94643 1.02022 1.21591 0.94393 0.96902 1.03012 1.21922 0.90742 0.95396 0.99021 1.60595 1.03946 1.09862 1.56790 1.21443 0.95835 0.87998 0.97363 1.19382 0.92005 0.94707 0.93127 1.20253 1.28517 1.01299 1.03273 0.91035 1.25025 0.93488 0.96027 0.97681 1.69932 1.34279 1.12015 1.37761 0.86994 0.82122 0.76879 0.83918 1.22626 1.23269 1.12878 1.22864 1.01940 1.04399 0.93870 1.22898 1.01676 0.92117 1.05940 0.90594 0.88189 0.90582 0.90136 0.90128 0.90816 0.90839 0.92000 0.91858 0.90998 0.91884 0.96253 0.92059 0.82494 0.96088 0.93628 0.92773 0.89995 0.90891 0.91310 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.76 101.05 1.09 0.28 16 2 S -0.27 -2.74 22.38 -107.50 -2.41 -5.14 16 3 C -0.08 -0.72 5.94 37.16 0.22 -0.50 16 4 C -0.11 -1.08 5.22 -26.73 -0.14 -1.22 16 5 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.12 -1.66 5.43 -26.73 -0.15 -1.81 16 7 C 0.06 0.91 5.69 -3.82 -0.02 0.89 16 8 N -0.68 -13.43 3.86 -113.78 -0.44 -13.87 16 9 C 0.10 2.09 5.61 -3.83 -0.02 2.07 16 10 C 0.01 0.21 1.37 -155.66 -0.21 -0.01 16 11 C -0.50 -13.73 8.73 -34.44 -0.30 -14.03 16 12 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 13 C 0.08 2.29 5.13 -17.82 -0.09 2.20 16 14 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 15 Si 0.87 21.98 23.18 -169.99 -3.94 18.04 16 16 H -0.30 -7.69 7.08 56.52 0.40 -7.29 16 17 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 18 H -0.21 -4.90 5.17 56.52 0.29 -4.60 16 19 C -0.19 -4.25 7.06 -26.69 -0.19 -4.44 16 20 C -0.19 -3.91 9.96 -26.69 -0.27 -4.18 16 21 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 22 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.35 7.72 7.24 -39.29 -0.28 7.43 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.93 6.31 -51.93 -0.33 1.60 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -29.98 335.25 -9.07 -39.04 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.89 Total: 5.64 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.22 Total: -22.02 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.33 Total: -40.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -3.94 Total: 18.04 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.41 Total: -5.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.98 -9.07 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235134218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.584 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds