Wall clock time and date at job start Mon Mar 30 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81405 * 102.99882 * 2 1 4 4 C 1.53005 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47107 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47107 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47125 * 184.85919 * 7 6 5 9 9 C 1.46901 * 110.99927 * 184.29952 * 8 7 6 10 10 C 1.52995 * 109.47336 * 185.66354 * 9 8 7 11 11 C 1.50695 * 115.55145 * 304.98740 * 10 9 8 12 12 H 1.08008 * 119.99747 * 274.71523 * 11 10 9 13 13 C 1.37879 * 120.00453 * 94.43560 * 11 10 9 14 14 N 1.31509 * 120.00172 * 180.29457 * 13 11 10 15 15 Si 1.86800 * 119.99804 * 0.29435 * 13 11 10 16 16 H 1.48497 * 109.47205 * 94.25437 * 15 13 11 17 17 H 1.48496 * 109.47468 * 214.26027 * 15 13 11 18 18 H 1.48505 * 109.47075 * 334.25599 * 15 13 11 19 19 C 1.53008 * 117.49752 * 90.65245 * 10 9 8 20 20 C 1.53000 * 117.50141 * 159.31389 * 10 9 8 21 21 H 1.09001 * 109.47593 * 60.00165 * 1 2 3 22 22 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47289 * 299.99634 * 1 2 3 24 24 H 1.09003 * 109.46895 * 60.00549 * 3 2 1 25 25 H 1.08995 * 109.47065 * 300.00063 * 3 2 1 26 26 H 1.09002 * 109.47386 * 60.00472 * 4 3 2 27 27 H 1.09002 * 109.47199 * 300.00337 * 4 3 2 28 28 H 1.09002 * 109.46786 * 59.99924 * 5 4 3 29 29 H 1.08997 * 109.47353 * 300.00613 * 5 4 3 30 30 H 1.09002 * 109.47229 * 60.00356 * 6 5 4 31 31 H 1.08995 * 109.47440 * 299.99843 * 6 5 4 32 32 H 1.08997 * 109.47272 * 64.85717 * 7 6 5 33 33 H 1.09002 * 109.46883 * 304.85932 * 7 6 5 34 34 H 1.00897 * 110.99617 * 308.24947 * 8 7 6 35 35 H 1.08997 * 109.47366 * 65.65796 * 9 8 7 36 36 H 1.09001 * 109.46829 * 305.66346 * 9 8 7 37 37 H 0.97005 * 120.00308 * 180.02562 * 14 13 11 38 38 H 1.09000 * 117.49507 * 215.00248 * 19 10 9 39 39 H 1.08997 * 117.50070 * 0.02750 * 19 10 9 40 40 H 1.09007 * 117.49514 * 359.97438 * 20 10 9 41 41 H 1.09000 * 117.50152 * 144.97761 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0864 3.4308 0.0013 6 6 5.6066 3.6032 0.0026 7 6 5.9508 5.0940 0.0039 8 7 7.4057 5.2608 -0.1122 9 6 7.7829 6.6770 -0.0119 10 6 9.2823 6.8255 -0.2774 11 6 10.1826 5.9865 0.5924 12 1 10.4855 6.3487 1.5638 13 6 10.6149 4.7540 0.1507 14 7 11.3958 4.0193 0.9122 15 14 10.0912 4.1277 -1.5295 16 1 11.1299 4.4741 -2.5327 17 1 9.9247 2.6530 -1.4783 18 1 8.8027 4.7583 -1.9133 19 6 9.7232 7.0697 -1.7220 20 6 9.7921 8.2054 -0.6979 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8031 2.2371 0.8901 25 1 1.8030 2.2371 -0.8899 26 1 4.1616 1.4704 -0.8891 27 1 4.1608 1.4704 0.8908 28 1 3.6671 3.9001 0.8913 29 1 3.6678 3.9008 -0.8886 30 1 6.0263 3.1339 -0.8872 31 1 6.0248 3.1335 0.8927 32 1 5.6064 5.5457 0.9342 33 1 5.4608 5.5807 -0.8395 34 1 7.8893 4.7079 0.5795 35 1 7.5528 7.0444 0.9881 36 1 7.2246 7.2547 -0.7486 37 1 11.7003 3.1524 0.6013 38 1 10.6645 6.6236 -2.0432 39 1 8.9451 7.1251 -2.4832 40 1 9.0591 9.0074 -0.7858 41 1 10.7785 8.5065 -0.3451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235134218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:32 Heat of formation + Delta-G solvation = -12.787401 kcal Electronic energy + Delta-G solvation = -16922.717828 eV Core-core repulsion = 14349.127178 eV Total energy + Delta-G solvation = -2573.590650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14685 -37.47890 -35.40727 -34.17070 -31.77663 -29.81172 -28.11172 -27.10736 -24.90293 -23.24459 -22.45689 -21.99458 -20.63306 -18.23757 -17.19959 -17.08330 -16.70342 -16.34407 -15.77899 -15.52722 -15.09212 -14.83148 -14.59198 -14.56685 -14.26554 -13.97376 -13.60045 -13.42483 -13.15972 -12.87738 -12.76459 -12.47259 -12.07377 -12.02950 -11.91822 -11.84748 -11.51964 -11.43285 -11.29417 -10.93297 -10.87878 -10.54694 -10.20227 -8.93073 -8.73722 -8.23147 -6.32171 0.73318 1.45946 1.54958 1.68389 1.87472 2.55295 3.12287 3.17566 3.57117 3.88363 3.92641 4.09366 4.17757 4.24508 4.31911 4.33453 4.42786 4.49031 4.55756 4.59450 4.64425 4.77026 4.80827 4.85664 4.88765 4.90888 4.92173 4.95890 5.06019 5.13933 5.20395 5.39533 5.41823 5.47146 5.53059 5.80461 6.32431 6.44449 6.60167 6.79662 7.41753 8.90458 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.030198 B = 0.003588 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.998312 B = 7801.612335 C = 8278.929401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.338 6.338 3 C -0.066 4.066 4 C -0.102 4.102 5 C -0.098 4.098 6 C -0.118 4.118 7 C 0.060 3.940 8 N -0.695 5.695 9 C 0.111 3.889 10 C -0.019 4.019 11 C -0.490 4.490 12 H 0.026 0.974 13 C 0.032 3.968 14 N -0.953 5.953 15 Si 0.933 3.067 16 H -0.305 1.305 17 H -0.317 1.317 18 H -0.177 1.177 19 C -0.190 4.190 20 C -0.171 4.171 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.337 0.663 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.535 -1.939 -4.348 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.112 6.112 3 C -0.214 4.214 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.157 4.157 7 C -0.069 4.069 8 N -0.326 5.326 9 C -0.018 4.018 10 C -0.020 4.020 11 C -0.528 4.528 12 H 0.044 0.956 13 C -0.165 4.165 14 N -0.593 5.593 15 Si 0.761 3.239 16 H -0.234 1.234 17 H -0.246 1.246 18 H -0.097 1.097 19 C -0.227 4.227 20 C -0.209 4.209 21 H 0.106 0.894 22 H 0.127 0.873 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.845 -2.960 -5.007 23.574 hybrid contribution -0.049 0.363 0.713 0.802 sum -22.894 -2.597 -4.294 23.438 Atomic orbital electron populations 1.23393 0.90792 1.07370 1.05890 1.87287 1.11254 1.14438 1.98240 1.23372 0.99944 0.92110 1.05931 1.21297 0.92836 0.97306 1.02654 1.21413 0.94222 0.94857 1.03257 1.21560 0.96688 0.95697 1.01716 1.22019 0.88174 0.96539 1.00120 1.60607 1.06425 1.09314 1.56253 1.21342 0.93662 0.88742 0.98088 1.19397 0.93095 0.96000 0.93500 1.20436 1.28530 1.01697 1.02134 0.95606 1.25756 0.93546 0.96298 1.00914 1.70067 1.36667 1.12676 1.39884 0.86103 0.82657 0.75552 0.79620 1.23391 1.24560 1.09737 1.22876 1.01711 1.04508 0.93636 1.22947 1.01940 0.92055 1.03959 0.89425 0.87349 0.89480 0.89000 0.88846 0.91876 0.92070 0.90836 0.90415 0.92362 0.93242 0.95381 0.90333 0.84448 0.96394 0.90751 0.92968 0.92062 0.88049 0.87468 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.76 113.37 1.22 0.04 16 2 S -0.34 -6.46 22.38 -56.49 -1.26 -7.73 16 3 C -0.07 -1.03 5.94 71.98 0.43 -0.60 16 4 C -0.10 -1.95 5.22 30.60 0.16 -1.79 16 5 C -0.10 -1.81 5.21 30.59 0.16 -1.65 16 6 C -0.12 -3.06 5.43 30.59 0.17 -2.90 16 7 C 0.06 1.70 5.69 86.30 0.49 2.19 16 8 N -0.69 -26.07 3.86 -513.89 -1.99 -28.05 16 9 C 0.11 4.19 5.61 86.30 0.48 4.67 16 10 C -0.02 -0.84 1.37 -52.93 -0.07 -0.91 16 11 C -0.49 -27.69 8.73 25.60 0.22 -27.46 16 12 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 13 C 0.03 1.89 5.13 84.66 0.43 2.32 16 14 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 15 Si 0.93 46.03 23.18 68.60 1.59 47.62 16 16 H -0.31 -15.31 7.08 99.48 0.70 -14.60 16 17 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16 18 H -0.18 -7.79 5.17 99.48 0.51 -7.28 16 19 C -0.19 -7.78 7.06 30.62 0.22 -7.56 16 20 C -0.17 -6.62 9.96 30.62 0.30 -6.32 16 21 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.34 14.59 7.24 -89.70 -0.65 13.94 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 37 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 38 H 0.06 2.76 6.31 -2.39 -0.02 2.75 16 39 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 41 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -66.55 335.25 2.97 -63.58 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.12 Total: 24.62 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.21 Total: -39.98 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.69 Total: -88.11 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.59 Total: 47.62 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.26 Total: -7.73 kcal Total: -66.55 2.97 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235134218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.792 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds