Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47112 * 2 1 4 4 C 1.38286 * 119.93219 * 264.97711 * 3 2 1 5 5 C 1.38047 * 120.16817 * 179.97438 * 4 3 2 6 6 C 1.39152 * 120.02307 * 359.97438 * 5 4 3 7 7 S 1.76202 * 120.06792 * 180.02562 * 6 5 4 8 8 C 1.76197 * 100.00106 * 6.94125 * 7 6 5 9 9 H 1.08002 * 119.99951 * 5.67453 * 8 7 6 10 10 C 1.38708 * 120.00071 * 185.67896 * 8 7 6 11 11 N 1.31635 * 120.00316 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47368 * 90.00299 * 12 10 8 14 14 H 1.48501 * 109.46981 * 210.00108 * 12 10 8 15 15 H 1.48502 * 109.47061 * 329.99554 * 12 10 8 16 16 C 1.39077 * 119.86183 * 359.80434 * 6 5 4 17 17 Cl 1.73606 * 120.08196 * 180.21197 * 16 6 5 18 18 C 1.38635 * 119.83761 * 0.44440 * 16 6 5 19 19 O 1.35929 * 120.01552 * 179.78622 * 18 16 6 20 20 H 1.08997 * 109.46806 * 59.99640 * 1 2 3 21 21 H 1.08998 * 109.47411 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47201 * 300.00130 * 1 2 3 23 23 H 1.08997 * 109.47122 * 240.00433 * 2 1 3 24 24 H 1.08998 * 109.46971 * 119.99838 * 2 1 3 25 25 H 1.08000 * 119.91831 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.99377 * 180.02562 * 5 4 3 27 27 H 0.96995 * 120.00330 * 180.02562 * 11 10 8 28 28 H 0.96698 * 114.00361 * 269.72701 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0364 -1.1938 5 6 2.8214 3.3379 -1.1995 6 6 2.9549 4.0345 -0.0023 7 16 3.5415 5.6960 -0.0083 8 6 3.5873 5.9981 -1.7435 9 1 3.2039 5.2584 -2.4308 10 6 4.1159 7.1858 -2.2270 11 7 4.1498 7.4118 -3.5234 12 14 4.7799 8.4649 -1.0385 13 1 6.2225 8.2116 -0.7937 14 1 4.6072 9.8195 -1.6219 15 1 4.0377 8.3804 0.2450 16 6 2.6201 3.4180 1.1986 17 17 2.7792 4.2835 2.6951 18 6 2.1635 2.1090 1.1981 19 8 1.8393 1.5015 2.3701 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.2572 1.4979 -2.1242 26 1 3.0771 3.8161 -2.1335 27 1 4.5198 8.2422 -3.8615 28 1 2.5751 1.0325 2.7867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238290260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = -41.486441 kcal Electronic energy + Delta-G solvation = -14549.091243 eV Core-core repulsion = 11909.747328 eV Total energy + Delta-G solvation = -2639.343915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49501 -36.31581 -35.99504 -33.65130 -32.78548 -29.52285 -28.85115 -25.97854 -23.85373 -22.24252 -20.79771 -18.58249 -17.83345 -16.07795 -15.57824 -15.48691 -15.11207 -14.09517 -13.85709 -13.61558 -13.38031 -12.81208 -12.59628 -12.14883 -11.91447 -11.51523 -11.31740 -11.18651 -11.15761 -10.84797 -10.75925 -10.49708 -10.24011 -9.76350 -9.45713 -8.90510 -8.78591 -8.15815 -6.91799 -6.56818 -4.32555 1.58161 1.60760 2.53627 2.83312 3.11733 3.23761 3.34035 3.90542 4.04096 4.39917 4.52540 4.84719 5.04089 5.16659 5.52768 5.53866 5.68767 5.78664 5.95667 5.97713 6.16777 6.17884 6.38853 6.58112 6.76355 6.91211 7.11679 7.66540 7.85111 8.23730 8.85199 10.50339 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.007012 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.429673 B = 3992.274871 C = 4860.269827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.132 4.132 6 C -0.053 4.053 7 S -0.001 6.001 8 C -0.548 4.548 9 H 0.110 0.890 10 C 0.102 3.898 11 N -0.861 5.861 12 Si 0.853 3.147 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.238 1.238 16 C -0.073 4.073 17 Cl -0.066 7.066 18 C 0.129 3.871 19 O -0.487 6.487 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.152 0.848 27 H 0.276 0.724 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 -11.065 7.608 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.157 4.157 6 C -0.170 4.170 7 S 0.255 5.745 8 C -0.694 4.694 9 H 0.128 0.872 10 C -0.109 4.109 11 N -0.495 5.495 12 Si 0.677 3.323 13 H -0.187 1.187 14 H -0.193 1.193 15 H -0.162 1.162 16 C -0.110 4.110 17 Cl -0.037 7.037 18 C 0.082 3.918 19 O -0.296 6.296 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.603 -9.572 8.324 12.950 hybrid contribution 0.524 -0.205 -0.559 0.794 sum -2.079 -9.777 7.765 12.657 Atomic orbital electron populations 1.21731 0.95108 1.00947 1.02385 1.20233 0.95971 0.92211 1.01878 1.19830 1.05684 0.96971 0.92143 1.20867 0.97894 0.94664 0.96774 1.21578 1.01449 0.94255 0.98393 1.22047 1.00899 1.00606 0.93454 1.83223 1.75377 1.03431 1.12506 1.22850 1.48337 1.08825 0.89428 0.87240 1.24782 0.93594 0.97325 0.95215 1.69912 1.41829 1.25825 1.11903 0.86833 0.81288 0.81611 0.82612 1.18680 1.19251 1.16161 1.20728 1.09817 0.93653 0.86801 1.98311 1.96485 1.76476 1.32432 1.17684 0.99184 0.89350 0.85550 1.84828 1.38793 1.71058 1.34938 0.92800 0.93045 0.92245 0.91590 0.91610 0.85912 0.83059 0.91356 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 15 2 C -0.07 -0.79 5.78 -27.88 -0.16 -0.95 15 3 C -0.14 -2.17 5.15 -104.40 -0.54 -2.71 15 4 C -0.08 -1.35 9.66 -39.63 -0.38 -1.73 15 5 C -0.13 -2.64 9.22 -39.31 -0.36 -3.01 15 6 C -0.05 -1.14 6.10 -38.93 -0.24 -1.38 15 7 S 0.00 -0.02 18.53 -107.50 -1.99 -2.02 15 8 C -0.55 -14.71 9.53 30.91 0.29 -14.41 15 9 H 0.11 3.04 5.20 -52.49 -0.27 2.77 15 10 C 0.10 2.77 5.50 -17.46 -0.10 2.67 15 11 N -0.86 -24.26 13.97 55.49 0.78 -23.48 15 12 Si 0.85 19.91 27.74 -169.99 -4.71 15.19 15 13 H -0.26 -6.03 7.11 56.52 0.40 -5.62 15 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 15 H -0.24 -5.44 6.74 56.52 0.38 -5.06 15 16 C -0.07 -1.40 6.35 -39.12 -0.25 -1.65 15 17 Cl -0.07 -1.19 27.39 -51.86 -1.42 -2.61 15 18 C 0.13 2.14 6.67 -39.23 -0.26 1.88 15 19 O -0.49 -6.82 12.09 -19.52 -0.24 -7.05 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.07 0.71 8.05 -51.93 -0.42 0.29 15 24 H 0.07 0.71 7.68 -51.93 -0.40 0.31 15 25 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 26 H 0.15 3.28 5.02 -52.49 -0.26 3.02 15 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 15 28 H 0.38 3.66 9.06 45.56 0.41 4.07 15 LS Contribution 270.33 15.07 4.07 4.07 Total: -1.00 -28.66 270.33 -6.93 -35.59 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -1.79 Total: 2.89 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.63 Total: -22.59 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.78 Total: -23.48 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.24 Total: -7.05 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.19 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.99 Total: -2.02 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.42 Total: -2.61 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.66 -6.93 -35.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238290260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.898 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds