Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47112 * 2 1 4 4 C 1.38286 * 119.93219 * 264.97711 * 3 2 1 5 5 C 1.38047 * 120.16817 * 179.97438 * 4 3 2 6 6 C 1.39152 * 120.02307 * 359.97438 * 5 4 3 7 7 S 1.76202 * 120.06792 * 180.02562 * 6 5 4 8 8 C 1.76197 * 100.00106 * 6.94125 * 7 6 5 9 9 H 1.08002 * 119.99951 * 5.67453 * 8 7 6 10 10 C 1.38708 * 120.00071 * 185.67896 * 8 7 6 11 11 N 1.31635 * 120.00316 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99939 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47368 * 90.00299 * 12 10 8 14 14 H 1.48501 * 109.46981 * 210.00108 * 12 10 8 15 15 H 1.48502 * 109.47061 * 329.99554 * 12 10 8 16 16 C 1.39077 * 119.86183 * 359.80434 * 6 5 4 17 17 Cl 1.73606 * 120.08196 * 180.21197 * 16 6 5 18 18 C 1.38635 * 119.83761 * 0.44440 * 16 6 5 19 19 O 1.35929 * 120.01552 * 179.78622 * 18 16 6 20 20 H 1.08997 * 109.46806 * 59.99640 * 1 2 3 21 21 H 1.08998 * 109.47411 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47201 * 300.00130 * 1 2 3 23 23 H 1.08997 * 109.47122 * 240.00433 * 2 1 3 24 24 H 1.08998 * 109.46971 * 119.99838 * 2 1 3 25 25 H 1.08000 * 119.91831 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.99377 * 180.02562 * 5 4 3 27 27 H 0.96995 * 120.00330 * 180.02562 * 11 10 8 28 28 H 0.96698 * 114.00361 * 269.72701 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0364 -1.1938 5 6 2.8214 3.3379 -1.1995 6 6 2.9549 4.0345 -0.0023 7 16 3.5415 5.6960 -0.0083 8 6 3.5873 5.9981 -1.7435 9 1 3.2039 5.2584 -2.4308 10 6 4.1159 7.1858 -2.2270 11 7 4.1498 7.4118 -3.5234 12 14 4.7799 8.4649 -1.0385 13 1 6.2225 8.2116 -0.7937 14 1 4.6072 9.8195 -1.6219 15 1 4.0377 8.3804 0.2450 16 6 2.6201 3.4180 1.1986 17 17 2.7792 4.2835 2.6951 18 6 2.1635 2.1090 1.1981 19 8 1.8393 1.5015 2.3701 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.2572 1.4979 -2.1242 26 1 3.0771 3.8161 -2.1335 27 1 4.5198 8.2422 -3.8615 28 1 2.5751 1.0325 2.7867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238290260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = -59.512687 kcal Electronic energy + Delta-G solvation = -14549.872920 eV Core-core repulsion = 11909.747328 eV Total energy + Delta-G solvation = -2640.125592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84697 -37.61232 -37.43545 -34.89205 -34.73999 -30.94852 -30.16003 -27.97002 -25.03188 -23.69066 -22.03166 -20.26822 -19.36211 -17.55362 -17.21766 -16.98847 -16.67325 -15.58285 -15.34360 -14.90651 -14.57649 -14.27333 -14.09642 -13.45142 -13.32973 -13.17468 -13.08615 -12.82858 -12.34255 -12.27947 -11.96539 -11.92475 -11.65242 -11.34926 -11.30316 -10.75336 -10.40134 -9.57990 -8.69402 -8.60065 -6.35694 0.13037 0.18476 0.88239 1.23120 1.26571 1.39308 1.59275 2.13913 2.48521 2.50096 2.80442 3.22661 3.87636 3.99383 4.28207 4.39941 4.54700 4.60394 4.71698 4.86891 5.05703 5.11832 5.19641 5.35179 5.44776 5.56031 5.64412 5.78256 6.14343 6.78617 6.81121 8.50676 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.007012 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.429673 B = 3992.274871 C = 4860.269827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.121 4.121 4 C -0.076 4.076 5 C -0.149 4.149 6 C -0.076 4.076 7 S -0.028 6.028 8 C -0.558 4.558 9 H 0.086 0.914 10 C 0.053 3.947 11 N -0.904 5.904 12 Si 0.907 3.093 13 H -0.256 1.256 14 H -0.256 1.256 15 H -0.233 1.233 16 C -0.082 4.082 17 Cl -0.059 7.059 18 C 0.138 3.862 19 O -0.484 6.484 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.153 0.847 26 H 0.126 0.874 27 H 0.281 0.719 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -13.407 9.223 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.174 4.174 6 C -0.192 4.192 7 S 0.224 5.776 8 C -0.705 4.705 9 H 0.103 0.897 10 C -0.154 4.154 11 N -0.540 5.540 12 Si 0.728 3.272 13 H -0.180 1.180 14 H -0.180 1.180 15 H -0.156 1.156 16 C -0.118 4.118 17 Cl -0.030 7.030 18 C 0.090 3.910 19 O -0.296 6.296 20 H 0.065 0.935 21 H 0.095 0.905 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.171 0.829 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.154 -11.991 9.965 15.906 hybrid contribution 0.561 0.187 -0.971 1.137 sum -2.593 -11.803 8.994 15.064 Atomic orbital electron populations 1.21715 0.94580 1.02385 1.01358 1.20390 0.96197 0.89616 1.04044 1.20320 1.02662 0.98588 0.90992 1.21171 0.96503 0.93187 0.98778 1.21493 1.02874 0.95892 0.97101 1.22009 1.02824 0.99440 0.94930 1.82893 1.78027 1.06708 1.09958 1.22985 1.47909 1.08515 0.91057 0.89671 1.25590 0.93906 0.99187 0.96686 1.69994 1.43610 1.26835 1.13579 0.86012 0.80863 0.79538 0.80808 1.18019 1.18050 1.15626 1.20971 1.09697 0.94682 0.86419 1.98310 1.96475 1.76598 1.31622 1.17752 0.97696 0.88509 0.87003 1.84783 1.39973 1.70924 1.33919 0.93472 0.90470 0.93672 0.89449 0.89555 0.82928 0.85634 0.90966 0.73448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.02 15 2 C -0.07 -1.25 5.78 29.85 0.17 -1.08 15 3 C -0.12 -3.32 5.15 -19.72 -0.10 -3.42 15 4 C -0.08 -2.38 9.66 22.24 0.21 -2.17 15 5 C -0.15 -6.06 9.22 22.44 0.21 -5.85 15 6 C -0.08 -3.30 6.10 22.69 0.14 -3.16 15 7 S -0.03 -1.35 18.53 -56.49 -1.05 -2.39 15 8 C -0.56 -31.29 9.53 67.93 0.65 -30.64 15 9 H 0.09 5.05 5.20 -2.91 -0.02 5.04 15 10 C 0.05 2.99 5.50 84.83 0.47 3.45 15 11 N -0.90 -52.85 13.97 21.63 0.30 -52.54 15 12 Si 0.91 41.75 27.74 68.60 1.90 43.66 15 13 H -0.26 -11.40 7.11 99.48 0.71 -10.70 15 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 15 H -0.23 -10.42 6.74 99.48 0.67 -9.75 15 16 C -0.08 -3.04 6.35 22.57 0.14 -2.89 15 17 Cl -0.06 -2.05 27.39 -2.72 -0.07 -2.13 15 18 C 0.14 4.18 6.67 22.50 0.15 4.33 15 19 O -0.48 -11.65 12.09 -92.75 -1.12 -12.77 15 20 H 0.05 0.96 8.14 -2.39 -0.02 0.94 15 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.04 0.99 8.14 -2.38 -0.02 0.97 15 23 H 0.09 1.39 8.05 -2.39 -0.02 1.37 15 24 H 0.09 1.38 7.68 -2.39 -0.02 1.36 15 25 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 26 H 0.13 5.78 5.02 -2.91 -0.01 5.76 15 27 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 28 H 0.41 5.95 9.06 -74.06 -0.67 5.27 15 Total: -1.00 -63.80 270.33 3.21 -60.59 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.49 Total: 9.03 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.75 Total: -43.44 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.30 Total: -52.54 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.12 Total: -12.77 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.90 Total: 43.66 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.05 Total: -2.39 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.13 kcal Total: -63.80 3.21 -60.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238290260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.077 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds