Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47336 * 2 1 4 4 C 1.38290 * 119.93574 * 265.00013 * 3 2 1 5 5 C 1.38126 * 120.13740 * 179.97438 * 4 3 2 6 6 Cl 1.73596 * 120.00440 * 180.02562 * 5 4 3 7 7 C 1.39264 * 119.99328 * 0.02894 * 5 4 3 8 8 S 1.76195 * 120.06680 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00247 * 187.08296 * 8 7 5 10 10 H 1.07998 * 119.99547 * 5.68818 * 9 8 7 11 11 C 1.38706 * 120.00400 * 185.69793 * 9 8 7 12 12 N 1.31641 * 119.99854 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47328 * 89.99269 * 13 11 9 15 15 H 1.48497 * 109.47222 * 209.99628 * 13 11 9 16 16 H 1.48501 * 109.46955 * 329.99454 * 13 11 9 17 17 C 1.38982 * 119.86201 * 359.97438 * 7 5 4 18 18 C 1.38549 * 119.86661 * 359.97438 * 17 7 5 19 19 O 1.35928 * 119.99461 * 180.02562 * 18 17 7 20 20 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47072 * 300.00087 * 1 2 3 22 22 H 1.09001 * 109.47031 * 59.99717 * 1 2 3 23 23 H 1.09006 * 109.47017 * 240.00401 * 2 1 3 24 24 H 1.08992 * 109.47234 * 120.00269 * 2 1 3 25 25 H 1.07999 * 119.92913 * 0.02562 * 4 3 2 26 26 H 0.97001 * 119.99502 * 180.02562 * 12 11 9 27 27 H 1.08001 * 120.05963 * 179.72745 * 17 7 5 28 28 H 0.96696 * 113.99624 * 90.00290 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0366 -1.1938 5 6 2.8212 3.3389 -1.1987 6 17 3.2320 4.1088 -2.6994 7 6 2.9559 4.0342 0.0004 8 16 3.5423 5.6957 -0.0037 9 6 3.7058 5.9667 1.7297 10 1 3.5439 5.1530 2.4210 11 6 4.0422 7.2252 2.2062 12 7 4.2398 8.2169 1.3635 13 14 4.2162 7.5123 4.0438 14 1 5.6197 7.2544 4.4544 15 1 3.8579 8.9181 4.3612 16 1 3.3091 6.5928 4.7765 17 6 2.6257 3.4151 1.2001 18 6 2.1635 2.1090 1.1982 19 8 1.8394 1.5012 2.3700 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 2.2565 1.4984 -2.1243 26 1 4.4753 9.0969 1.6968 27 1 2.7331 3.9499 2.1323 28 1 0.9160 1.6190 2.6319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238326165.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = -45.230116 kcal Electronic energy + Delta-G solvation = -14513.037815 eV Core-core repulsion = 11873.531562 eV Total energy + Delta-G solvation = -2639.506253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38639 -36.55552 -35.44425 -33.70077 -32.82141 -29.78202 -28.46268 -25.91967 -23.77525 -22.17065 -20.77074 -18.63755 -17.43078 -16.12692 -15.65374 -15.31480 -14.87822 -14.38838 -13.68651 -13.48431 -13.25387 -12.92135 -12.63207 -12.12181 -11.92653 -11.36628 -11.26032 -11.17007 -11.06633 -10.82695 -10.61355 -10.38762 -10.26398 -9.66167 -9.53897 -8.76734 -8.69967 -8.03322 -6.65056 -6.57008 -4.29342 1.60332 1.78348 2.73071 3.04567 3.08480 3.15480 3.30368 3.90954 3.97016 4.61849 4.85586 5.00506 5.11864 5.19110 5.40266 5.50291 5.74265 5.84406 5.95282 6.08067 6.17573 6.30588 6.40646 6.61582 6.77116 6.93970 7.10515 7.40873 8.00939 8.08112 8.90767 10.49035 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.007458 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.167764 B = 3753.401298 C = 4952.156793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.073 4.073 5 C -0.059 4.059 6 Cl -0.076 7.076 7 C -0.073 4.073 8 S 0.095 5.905 9 C -0.563 4.563 10 H 0.094 0.906 11 C 0.081 3.919 12 N -0.861 5.861 13 Si 0.925 3.075 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.160 4.160 18 C 0.128 3.872 19 O -0.498 6.498 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.275 0.725 27 H 0.149 0.851 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -11.095 -2.299 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.158 4.158 4 C -0.094 4.094 5 C -0.096 4.096 6 Cl -0.047 7.047 7 C -0.191 4.191 8 S 0.354 5.646 9 C -0.710 4.710 10 H 0.112 0.888 11 C -0.130 4.130 12 N -0.494 5.494 13 Si 0.750 3.250 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.187 4.187 18 C 0.081 3.919 19 O -0.308 6.308 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.797 -9.875 -3.342 11.476 hybrid contribution -0.594 -0.352 2.009 2.124 sum -5.391 -10.227 -1.333 11.638 Atomic orbital electron populations 1.21722 0.95545 1.01017 1.01841 1.20258 0.95411 0.92635 1.02395 1.19702 1.06983 0.97201 0.91869 1.20477 0.98914 0.92501 0.97464 1.20264 1.09541 0.93893 0.85898 1.98313 1.92401 1.81656 1.32347 1.22561 1.00120 1.03246 0.93184 1.83758 1.70668 0.99521 1.10645 1.23475 1.55902 0.99415 0.92228 0.88802 1.25106 0.93340 0.94576 1.00013 1.69995 1.42211 1.01968 1.35181 0.86048 0.79127 0.77970 0.81876 1.19778 1.20414 1.19152 1.21620 1.04102 0.94198 0.98772 1.18219 0.98929 0.90413 0.84296 1.84766 1.32572 1.75617 1.37803 0.92884 0.93054 0.92719 0.91681 0.90941 0.85728 0.91469 0.83420 0.76268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 37.15 0.37 -1.15 15 2 C -0.07 -0.87 5.78 -27.89 -0.16 -1.03 15 3 C -0.15 -2.41 5.15 -104.39 -0.54 -2.95 15 4 C -0.07 -1.22 9.45 -39.60 -0.37 -1.59 15 5 C -0.06 -1.16 6.34 -39.24 -0.25 -1.40 15 6 Cl -0.08 -1.39 27.83 -51.86 -1.44 -2.83 15 7 C -0.07 -1.61 6.10 -38.92 -0.24 -1.85 15 8 S 0.09 2.39 20.56 -107.50 -2.21 0.18 15 9 C -0.56 -15.03 8.99 30.91 0.28 -14.75 15 10 H 0.09 2.41 4.98 -52.49 -0.26 2.15 15 11 C 0.08 2.14 5.49 -17.46 -0.10 2.04 15 12 N -0.86 -23.91 13.22 55.49 0.73 -23.18 15 13 Si 0.92 20.26 29.55 -169.99 -5.02 15.23 15 14 H -0.27 -5.91 7.11 56.52 0.40 -5.50 15 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 17 C -0.16 -3.34 9.16 -39.19 -0.36 -3.69 15 18 C 0.13 2.27 6.67 -39.26 -0.26 2.01 15 19 O -0.50 -7.64 12.63 -19.51 -0.25 -7.88 15 20 H 0.05 0.47 8.14 -51.93 -0.42 0.04 15 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.06 0.73 8.05 -51.93 -0.42 0.31 15 24 H 0.07 0.91 7.68 -51.93 -0.40 0.51 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 26 H 0.28 7.10 8.31 -40.82 -0.34 6.76 15 27 H 0.15 3.25 5.03 -52.49 -0.26 2.99 15 28 H 0.38 4.09 9.06 45.56 0.41 4.50 15 LS Contribution 273.73 15.07 4.13 4.13 Total: -1.00 -28.81 273.73 -7.45 -36.26 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -1.75 Total: 2.46 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -1.63 Total: -24.37 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.73 Total: -23.18 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.25 Total: -7.88 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.21 Total: 0.18 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.44 Total: -2.83 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.81 -7.45 -36.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238326165.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.970 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds