Wall clock time and date at job start Mon Mar 30 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47354 * 2 1 4 4 C 1.38315 * 119.87595 * 90.00239 * 3 2 1 5 5 C 1.38491 * 120.05569 * 179.97438 * 4 3 2 6 6 O 1.35933 * 120.09262 * 180.02562 * 5 4 3 7 7 C 1.39573 * 119.82190 * 359.97438 * 5 4 3 8 8 S 1.76194 * 120.11916 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00341 * 269.97574 * 8 7 5 10 10 H 1.08007 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.38682 * 120.00534 * 180.02562 * 9 8 7 12 12 N 1.31661 * 119.99431 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00139 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47080 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47061 * 120.00229 * 13 11 9 16 16 H 1.48502 * 109.46876 * 240.00037 * 13 11 9 17 17 C 1.39066 * 119.75973 * 0.02562 * 7 5 4 18 18 Cl 1.73590 * 120.02943 * 180.02562 * 17 7 5 19 19 C 1.38234 * 119.93773 * 0.02562 * 17 7 5 20 20 H 1.09002 * 109.47357 * 59.99378 * 1 2 3 21 21 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46926 * 299.99554 * 1 2 3 23 23 H 1.09000 * 109.46786 * 239.99914 * 2 1 3 24 24 H 1.09002 * 109.47357 * 120.00622 * 2 1 3 25 25 H 1.08002 * 119.97479 * 359.70488 * 4 3 2 26 26 H 0.96698 * 113.99984 * 89.99845 * 6 5 4 27 27 H 0.96997 * 119.99504 * 179.97438 * 12 11 9 28 28 H 1.08005 * 119.90824 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2621 2.0703 1.1993 5 6 2.7243 3.3758 1.2037 6 8 2.9508 4.0147 2.3819 7 6 2.9579 4.0334 -0.0050 8 16 3.5466 5.6941 -0.0086 9 6 2.0134 6.5623 -0.0107 10 1 1.0826 6.0145 -0.0100 11 6 2.0017 7.9491 -0.0143 12 7 3.1363 8.6169 -0.0167 13 14 0.3761 8.8694 -0.0158 14 1 -0.7444 7.8950 -0.0132 15 1 0.2910 9.7257 1.1945 16 1 0.2896 9.7193 -1.2305 17 6 2.7244 3.3732 -1.2065 18 17 3.0132 4.1842 -2.7139 19 6 2.2621 2.0705 -1.1992 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.0768 1.5605 2.1332 26 1 3.8491 3.9047 2.7226 27 1 3.1282 9.5868 -0.0196 28 1 2.0812 1.5580 -2.1326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238335830.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:04 Heat of formation + Delta-G solvation = -40.075198 kcal Electronic energy + Delta-G solvation = -14578.479167 eV Core-core repulsion = 11939.196449 eV Total energy + Delta-G solvation = -2639.282719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.36374 -36.69216 -35.84717 -33.34329 -32.41617 -29.62243 -28.92127 -25.49832 -23.95615 -22.28593 -20.93257 -18.10591 -17.37190 -16.24514 -15.96881 -15.00810 -14.77841 -14.25532 -14.00618 -13.67436 -13.42905 -12.81777 -12.59349 -12.14269 -11.75333 -11.46514 -11.09492 -11.05644 -10.98272 -10.87542 -10.59082 -10.39658 -10.15031 -9.78712 -9.06532 -8.91604 -8.22265 -7.85745 -6.55622 -6.20886 -3.90432 1.41474 1.51452 2.68685 3.23975 3.24279 3.32466 3.48979 3.79772 4.24761 4.56453 4.86402 5.05948 5.15541 5.31873 5.38080 5.41754 5.54486 5.55982 5.76406 5.81547 5.96379 6.11981 6.17227 6.38594 6.58986 6.69789 6.94466 7.65878 8.12890 8.41245 9.25694 10.86440 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.007271 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.059100 B = 3849.727277 C = 4083.171888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.060 4.060 4 C -0.156 4.156 5 C 0.154 3.846 6 O -0.477 6.477 7 C -0.132 4.132 8 S -0.011 6.011 9 C -0.504 4.504 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.874 5.874 13 Si 0.919 3.081 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.016 3.984 18 Cl -0.049 7.049 19 C -0.136 4.136 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.388 0.612 27 H 0.267 0.733 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -14.920 -0.044 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.061 4.061 4 C -0.176 4.176 5 C 0.105 3.895 6 O -0.286 6.286 7 C -0.244 4.244 8 S 0.224 5.776 9 C -0.651 4.651 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.511 5.511 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.014 4.014 18 Cl -0.019 7.019 19 C -0.156 4.156 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.144 0.856 26 H 0.244 0.756 27 H 0.077 0.923 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.579 -14.015 -0.233 14.029 hybrid contribution -1.752 0.107 -0.021 1.755 sum -2.331 -13.908 -0.254 14.105 Atomic orbital electron populations 1.21761 0.94718 1.01453 1.02593 1.20500 0.96194 0.92218 1.02751 1.19589 0.98427 0.96017 0.92083 1.21241 1.04245 0.94046 0.98078 1.18472 0.96307 0.89099 0.85571 1.84867 1.35165 1.74153 1.34460 1.23260 1.04028 1.04649 0.92431 1.83358 1.12347 0.86342 1.95582 1.22762 0.91646 0.93048 1.57676 0.90897 1.24930 0.97596 0.96378 0.94677 1.70001 1.25277 1.07808 1.47994 0.86093 0.82195 0.79342 0.77834 1.19581 1.20544 1.20564 1.21264 0.99784 0.92604 0.87799 1.98360 1.94183 1.79694 1.29711 1.20821 1.03124 0.93420 0.98223 0.92404 0.92507 0.92424 0.90950 0.90976 0.85562 0.75571 0.92298 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 15 2 C -0.08 -0.84 6.06 -27.89 -0.17 -1.01 15 3 C -0.06 -0.87 5.14 -104.57 -0.54 -1.41 15 4 C -0.16 -2.46 9.63 -39.46 -0.38 -2.84 15 5 C 0.15 2.98 6.71 -38.99 -0.26 2.72 15 6 O -0.48 -8.98 12.88 -19.53 -0.25 -9.23 15 7 C -0.13 -2.90 5.47 -38.78 -0.21 -3.11 15 8 S -0.01 -0.28 19.81 -107.50 -2.13 -2.41 15 9 C -0.50 -14.63 9.46 30.90 0.29 -14.34 15 10 H 0.07 2.15 7.79 -52.48 -0.41 1.75 15 11 C 0.07 2.07 5.49 -17.46 -0.10 1.98 15 12 N -0.87 -25.99 13.22 55.48 0.73 -25.26 15 13 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 15 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 17 C 0.02 0.32 6.34 -39.28 -0.25 0.07 15 18 Cl -0.05 -0.97 27.84 -51.86 -1.44 -2.41 15 19 C -0.14 -2.18 9.47 -39.56 -0.37 -2.56 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 0.67 8.08 -51.93 -0.42 0.25 15 24 H 0.07 0.66 8.08 -51.93 -0.42 0.24 15 25 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.39 5.34 9.06 45.56 0.41 5.75 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 28 H 0.13 1.73 8.06 -52.48 -0.42 1.31 15 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -32.41 280.15 -7.60 -40.01 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.08 Total: -0.40 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.62 Total: -21.63 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.73 Total: -25.26 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.25 Total: -9.23 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.13 Total: -2.41 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.44 Total: -2.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.41 -7.60 -40.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238335830.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.070 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds