Wall clock time and date at job start Mon Mar 30 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47354 * 2 1 4 4 C 1.38315 * 119.87595 * 90.00239 * 3 2 1 5 5 C 1.38491 * 120.05569 * 179.97438 * 4 3 2 6 6 O 1.35933 * 120.09262 * 180.02562 * 5 4 3 7 7 C 1.39573 * 119.82190 * 359.97438 * 5 4 3 8 8 S 1.76194 * 120.11916 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00341 * 269.97574 * 8 7 5 10 10 H 1.08007 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.38682 * 120.00534 * 180.02562 * 9 8 7 12 12 N 1.31661 * 119.99431 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00139 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47080 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47061 * 120.00229 * 13 11 9 16 16 H 1.48502 * 109.46876 * 240.00037 * 13 11 9 17 17 C 1.39066 * 119.75973 * 0.02562 * 7 5 4 18 18 Cl 1.73590 * 120.02943 * 180.02562 * 17 7 5 19 19 C 1.38234 * 119.93773 * 0.02562 * 17 7 5 20 20 H 1.09002 * 109.47357 * 59.99378 * 1 2 3 21 21 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46926 * 299.99554 * 1 2 3 23 23 H 1.09000 * 109.46786 * 239.99914 * 2 1 3 24 24 H 1.09002 * 109.47357 * 120.00622 * 2 1 3 25 25 H 1.08002 * 119.97479 * 359.70488 * 4 3 2 26 26 H 0.96698 * 113.99984 * 89.99845 * 6 5 4 27 27 H 0.96997 * 119.99504 * 179.97438 * 12 11 9 28 28 H 1.08005 * 119.90824 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2621 2.0703 1.1993 5 6 2.7243 3.3758 1.2037 6 8 2.9508 4.0147 2.3819 7 6 2.9579 4.0334 -0.0050 8 16 3.5466 5.6941 -0.0086 9 6 2.0134 6.5623 -0.0107 10 1 1.0826 6.0145 -0.0100 11 6 2.0017 7.9491 -0.0143 12 7 3.1363 8.6169 -0.0167 13 14 0.3761 8.8694 -0.0158 14 1 -0.7444 7.8950 -0.0132 15 1 0.2910 9.7257 1.1945 16 1 0.2896 9.7193 -1.2305 17 6 2.7244 3.3732 -1.2065 18 17 3.0132 4.1842 -2.7139 19 6 2.2621 2.0705 -1.1992 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.0768 1.5605 2.1332 26 1 3.8491 3.9047 2.7226 27 1 3.1282 9.5868 -0.0196 28 1 2.0812 1.5580 -2.1326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238335830.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:04 Heat of formation + Delta-G solvation = -61.183835 kcal Electronic energy + Delta-G solvation = -14579.394507 eV Core-core repulsion = 11939.196449 eV Total energy + Delta-G solvation = -2640.198058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72354 -38.08998 -37.27483 -34.60492 -34.47346 -30.94268 -30.16952 -27.69250 -25.03408 -23.66891 -22.11367 -20.00347 -18.91992 -17.79076 -17.30129 -16.90197 -16.40061 -15.52876 -15.42177 -14.96975 -14.58519 -14.32210 -14.02627 -13.38271 -13.18432 -13.02118 -12.92802 -12.74719 -12.46346 -12.04508 -11.93497 -11.82860 -11.65843 -11.46268 -11.17141 -10.71321 -9.60528 -9.47624 -8.64484 -8.35102 -6.08744 -0.00786 0.14963 1.15753 1.31094 1.34677 1.45978 1.74666 2.24244 2.45675 2.97489 3.26349 3.44918 3.79612 4.08940 4.16722 4.26544 4.45656 4.54437 4.69143 4.82403 5.03859 5.05143 5.13906 5.24289 5.41085 5.41506 5.49114 5.71908 6.19328 6.85188 7.05960 8.71950 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.007271 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.059100 B = 3849.727277 C = 4083.171888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.041 4.041 4 C -0.148 4.148 5 C 0.143 3.857 6 O -0.495 6.495 7 C -0.169 4.169 8 S -0.055 6.055 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.022 3.978 12 N -0.907 5.907 13 Si 0.985 3.015 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.269 1.269 17 C 0.000 4.000 18 Cl -0.062 7.062 19 C -0.133 4.133 20 H 0.047 0.953 21 H 0.081 0.919 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.406 0.594 27 H 0.272 0.728 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -17.367 0.258 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.041 4.041 4 C -0.168 4.168 5 C 0.095 3.905 6 O -0.307 6.307 7 C -0.281 4.281 8 S 0.180 5.820 9 C -0.667 4.667 10 H 0.073 0.927 11 C -0.183 4.183 12 N -0.544 5.544 13 Si 0.807 3.193 14 H -0.195 1.195 15 H -0.194 1.194 16 H -0.194 1.194 17 C -0.030 4.030 18 Cl -0.033 7.033 19 C -0.153 4.153 20 H 0.067 0.933 21 H 0.100 0.900 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.176 0.824 26 H 0.265 0.735 27 H 0.081 0.919 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.985 -16.478 0.074 16.598 hybrid contribution -1.300 0.664 -0.086 1.463 sum -3.286 -15.814 -0.013 16.152 Atomic orbital electron populations 1.21772 0.94152 1.02907 1.01728 1.20641 0.96402 0.89299 1.05008 1.20154 0.95408 0.97784 0.90796 1.21555 1.02679 0.92484 1.00111 1.18704 0.96762 0.90388 0.84656 1.84799 1.36818 1.74761 1.34344 1.23113 1.08084 1.02271 0.94642 1.83166 1.12549 0.90370 1.95953 1.22911 0.92113 0.93875 1.57846 0.92653 1.25842 1.01240 0.97131 0.94099 1.70104 1.27364 1.08252 1.48714 0.85106 0.77658 0.77992 0.78506 1.19487 1.19375 1.19406 1.21427 1.00900 0.93928 0.86703 1.98346 1.94373 1.80270 1.30264 1.21174 1.01867 0.91898 1.00321 0.93334 0.89971 0.93308 0.88882 0.88684 0.82353 0.73527 0.91888 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.89 71.98 0.71 -1.65 15 2 C -0.08 -1.23 6.06 29.85 0.18 -1.05 15 3 C -0.04 -1.04 5.14 -19.83 -0.10 -1.14 15 4 C -0.15 -4.27 9.63 22.35 0.22 -4.06 15 5 C 0.14 5.46 6.71 22.65 0.15 5.61 15 6 O -0.49 -18.67 12.88 -92.80 -1.20 -19.86 15 7 C -0.17 -7.54 5.47 22.79 0.12 -7.41 15 8 S -0.05 -2.99 19.81 -56.49 -1.12 -4.11 15 9 C -0.52 -31.15 9.46 67.93 0.64 -30.51 15 10 H 0.06 3.39 7.79 -2.91 -0.02 3.36 15 11 C 0.02 1.26 5.49 84.82 0.47 1.73 15 12 N -0.91 -55.15 13.22 21.63 0.29 -54.86 15 13 Si 0.98 45.90 29.55 68.60 2.03 47.93 15 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 17 C 0.00 0.02 6.34 22.47 0.14 0.16 15 18 Cl -0.06 -2.48 27.84 -2.72 -0.08 -2.56 15 19 C -0.13 -3.96 9.47 22.29 0.21 -3.75 15 20 H 0.05 0.86 8.14 -2.39 -0.02 0.85 15 21 H 0.08 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 15 23 H 0.09 1.21 8.08 -2.39 -0.02 1.19 15 24 H 0.09 1.19 8.08 -2.39 -0.02 1.17 15 25 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 26 H 0.41 11.25 9.06 -74.06 -0.67 10.58 15 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 28 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 Total: -1.00 -72.27 280.15 3.18 -69.09 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.51 Total: 6.45 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 2.74 Total: -42.07 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.29 Total: -54.86 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.20 Total: -19.86 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.12 Total: -4.11 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.08 Total: -2.56 kcal Total: -72.27 3.18 -69.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238335830.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.903 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds