Wall clock time and date at job start Mon Mar 30 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.32675 * 119.93712 * 87.83502 * 3 2 1 5 5 C 1.31604 * 121.91225 * 179.97438 * 4 3 2 6 6 C 1.38926 * 121.54400 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.17018 * 180.02562 * 6 5 4 8 8 F 1.39903 * 109.46795 * 30.00430 * 7 6 5 9 9 F 1.39902 * 109.47353 * 150.00149 * 7 6 5 10 10 C 1.38015 * 119.66190 * 0.02562 * 6 5 4 11 11 Cl 1.73600 * 120.88004 * 179.97438 * 10 6 5 12 12 C 1.41403 * 118.24124 * 359.74463 * 10 6 5 13 13 C 1.40740 * 120.74336 * 180.24734 * 12 10 6 14 14 H 1.07997 * 119.99638 * 223.56901 * 13 12 10 15 15 C 1.40274 * 120.00142 * 43.56963 * 13 12 10 16 16 N 1.30646 * 119.99958 * 21.08217 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 201.08002 * 15 13 12 18 18 H 1.48496 * 109.47031 * 90.00126 * 17 15 13 19 19 H 1.48506 * 109.46912 * 209.99967 * 17 15 13 20 20 H 1.48497 * 109.46949 * 329.99764 * 17 15 13 21 21 H 1.08002 * 119.22665 * 179.97438 * 5 4 3 22 22 H 1.09000 * 109.47402 * 270.00522 * 7 6 5 23 23 H 0.97000 * 120.00042 * 182.35220 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2301 -0.0425 -1.1489 5 6 4.5454 -0.0431 -1.1942 6 6 5.3125 0.0021 -0.0369 7 6 6.8169 0.0005 -0.1249 8 9 7.2149 0.6155 -1.3168 9 9 7.3484 0.7027 0.9622 10 6 4.6898 0.0483 1.1939 11 17 5.6174 0.1049 2.6602 12 6 3.2762 0.0535 1.2288 13 6 2.5870 0.1050 2.4548 14 1 1.7300 -0.5312 2.6196 15 6 3.0131 0.9827 3.4627 16 7 3.7499 2.0179 3.1588 17 14 2.5270 0.6714 5.2393 18 1 3.5538 -0.1804 5.8914 19 1 2.4279 1.9663 5.9595 20 1 1.2130 -0.0191 5.2791 21 1 5.0399 -0.0796 -2.1537 22 1 7.1809 -1.0267 -0.1070 23 1 4.0730 2.6057 3.8595 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238534385.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:24 Heat of formation + Delta-G solvation = -60.246656 kcal Electronic energy + Delta-G solvation = -16600.737368 eV Core-core repulsion = 13303.199219 eV Total energy + Delta-G solvation = -3297.538149 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.82386 -47.84102 -40.73390 -37.43091 -37.10262 -35.98769 -33.52304 -32.68225 -28.13849 -27.42307 -24.36857 -23.36466 -20.09697 -19.56157 -18.41875 -18.27528 -17.80735 -17.12572 -16.75142 -15.69046 -15.38357 -14.99871 -14.67456 -14.45204 -14.29487 -14.09927 -13.84280 -13.66029 -13.56603 -13.50758 -13.05410 -12.84590 -12.58324 -12.33626 -12.02780 -11.50440 -10.85123 -10.43666 -10.01381 -9.67173 -8.92629 -6.77238 -0.24354 0.59187 1.36590 1.40385 1.45130 1.47804 1.87590 1.93197 2.13053 2.57917 2.81229 3.07325 3.26580 3.41131 3.73023 4.09321 4.17423 4.48611 4.59013 4.97309 5.02102 5.14334 5.52989 5.98775 6.25014 6.50531 6.66318 7.17749 8.04687 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.011712 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.807896 B = 2390.068190 C = 3691.066658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.318 3.682 3 C 0.041 3.959 4 N -0.437 5.437 5 C 0.033 3.967 6 C -0.170 4.170 7 C 0.321 3.679 8 F -0.200 7.200 9 F -0.203 7.203 10 C -0.024 4.024 11 Cl -0.044 7.044 12 C 0.093 3.907 13 C -0.461 4.461 14 H 0.088 0.912 15 C 0.061 3.939 16 N -0.769 5.769 17 Si 0.958 3.042 18 H -0.251 1.251 19 H -0.264 1.264 20 H -0.261 1.261 21 H 0.185 0.815 22 H 0.164 0.836 23 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -3.390 0.499 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C 0.005 3.995 3 C -0.097 4.097 4 N -0.145 5.145 5 C -0.132 4.132 6 C -0.174 4.174 7 C 0.267 3.733 8 F -0.182 7.182 9 F -0.184 7.184 10 C -0.060 4.060 11 Cl -0.015 7.015 12 C 0.085 3.915 13 C -0.488 4.488 14 H 0.106 0.894 15 C -0.163 4.163 16 N -0.390 5.390 17 Si 0.778 3.222 18 H -0.175 1.175 19 H -0.189 1.189 20 H -0.184 1.184 21 H 0.202 0.798 22 H 0.181 0.819 23 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.755 -3.123 -0.052 7.442 hybrid contribution 0.675 0.328 1.578 1.747 sum 7.430 -2.795 1.525 8.083 Atomic orbital electron populations 1.81000 1.12311 1.12862 1.09787 1.24983 0.91790 0.91686 0.91040 1.16494 0.85347 1.18479 0.89371 1.66937 1.10788 1.08698 1.28109 1.22125 0.87322 1.06458 0.97314 1.21467 0.96824 1.05169 0.93958 1.20465 0.87512 0.94539 0.70809 1.92966 1.91635 1.86138 1.47420 1.93045 1.87529 1.82406 1.55415 1.21198 0.91697 1.06014 0.87045 1.98276 1.71170 1.96085 1.35929 1.18060 0.90464 0.89880 0.93136 1.19620 1.13112 1.18866 0.97167 0.89361 1.26401 0.92979 0.92456 1.04474 1.69709 1.22601 1.08255 1.38478 0.85493 0.80357 0.79594 0.76754 1.17469 1.18868 1.18448 0.79809 0.81900 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.77 18.54 19.00 0.35 -22.42 14 2 C 0.32 14.98 14.57 88.33 1.29 16.27 14 3 C 0.04 1.87 6.66 41.18 0.27 2.14 14 4 N -0.44 -18.51 10.26 -186.93 -1.92 -20.43 14 5 C 0.03 1.19 10.55 84.89 0.90 2.09 14 6 C -0.17 -6.13 5.75 -19.75 -0.11 -6.24 14 7 C 0.32 9.14 5.50 71.24 0.39 9.53 14 8 F -0.20 -5.66 16.48 44.97 0.74 -4.92 14 9 F -0.20 -6.73 14.29 44.97 0.64 -6.09 14 10 C -0.02 -1.02 5.92 23.00 0.14 -0.88 14 11 Cl -0.04 -1.73 22.08 -2.72 -0.06 -1.79 14 12 C 0.09 4.30 5.31 -20.97 -0.11 4.19 14 13 C -0.46 -21.58 7.89 23.38 0.18 -21.40 14 14 H 0.09 4.17 7.79 -2.91 -0.02 4.15 14 15 C 0.06 2.66 3.83 85.36 0.33 2.99 14 16 N -0.77 -34.86 11.13 21.88 0.24 -34.62 14 17 Si 0.96 34.27 29.61 68.60 2.03 36.30 14 18 H -0.25 -8.58 7.11 99.48 0.71 -7.87 14 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 14 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 14 21 H 0.19 5.27 7.58 -2.91 -0.02 5.25 14 22 H 0.16 3.19 8.14 -2.39 -0.02 3.17 14 23 H 0.30 12.45 8.29 -92.71 -0.77 11.68 14 Total: -1.00 -52.57 241.48 6.59 -45.98 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.29 Total: -0.69 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 3.27 Total: 8.68 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.32 Total: -77.47 kcal Atomic # 9 Polarization: -12.39 SS G_CDS: 1.38 Total: -11.01 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.06 Total: -1.79 kcal Total: -52.57 6.59 -45.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238534385.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.270 kcal (2) G-P(sol) polarization free energy of solvation -52.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds