Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86804 * 120.00013 * 2 1 4 4 H 1.48500 * 109.46950 * 269.99817 * 3 2 1 5 5 H 1.48500 * 109.46936 * 29.99911 * 3 2 1 6 6 H 1.48504 * 109.46987 * 150.00198 * 3 2 1 7 7 C 1.39937 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00275 * 159.84565 * 7 2 1 9 9 C 1.41292 * 119.99979 * 339.84628 * 7 2 1 10 10 C 1.41009 * 120.26306 * 323.59832 * 9 7 2 11 11 F 1.35104 * 120.16105 * 359.97438 * 10 9 7 12 12 C 1.37943 * 119.67518 * 179.97438 * 10 9 7 13 13 C 1.38508 * 120.21788 * 0.02562 * 12 10 9 14 14 C 1.38699 * 120.54107 * 0.02562 * 13 12 10 15 15 C 1.37576 * 120.31891 * 359.68580 * 14 13 12 16 16 C 1.50708 * 120.11189 * 180.30419 * 15 14 13 17 17 Br 1.96596 * 109.47134 * 270.28211 * 16 15 14 18 18 H 0.96998 * 120.00150 * 359.97438 * 1 2 3 19 19 H 1.07993 * 119.88812 * 179.97438 * 12 10 9 20 20 H 1.07994 * 119.73282 * 179.97438 * 13 12 10 21 21 H 1.08001 * 119.83809 * 179.97438 * 14 13 12 22 22 H 1.09000 * 109.46688 * 30.28756 * 16 15 14 23 23 H 1.08996 * 109.46694 * 150.27826 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4402 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0386 -1.2407 -0.3217 9 6 1.3666 -2.3979 0.4227 10 6 0.4366 -2.3644 1.4821 11 9 0.1539 -1.1969 2.1004 12 6 -0.1830 -3.5294 1.8840 13 6 0.1064 -4.7270 1.2512 14 6 1.0204 -4.7705 0.2089 15 6 1.6469 -3.6209 -0.2139 16 6 2.6342 -3.6724 -1.3514 17 35 4.4360 -4.0090 -0.6406 18 1 -0.4850 0.8400 0.0004 19 1 -0.8955 -3.5078 2.6952 20 1 -0.3830 -5.6345 1.5725 21 1 1.2379 -5.7106 -0.2763 22 1 2.3580 -4.4743 -2.0361 23 1 2.6253 -2.7212 -1.8835 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238539373.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = -36.966023 kcal Electronic energy + Delta-G solvation = -12047.561756 eV Core-core repulsion = 9627.772999 eV Total energy + Delta-G solvation = -2419.788757 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.01200 -37.61865 -33.72529 -32.00570 -29.66766 -28.79087 -25.76193 -24.57742 -21.14031 -19.98059 -17.44539 -15.66626 -15.45346 -14.72341 -14.27856 -13.80263 -13.00421 -12.73879 -12.69137 -12.29922 -11.68319 -11.38848 -11.20813 -11.08632 -10.70430 -10.47632 -10.21341 -9.69214 -9.12750 -9.02547 -8.96671 -7.54394 -7.23570 -6.89301 -4.52449 2.10640 2.68343 3.06124 3.07051 3.09865 3.15831 3.91405 4.52091 5.30810 5.65986 5.70588 5.96546 6.06497 6.25222 6.44138 6.58441 6.95521 7.08728 7.37269 7.50637 7.66190 7.76309 8.04435 8.32457 8.66855 8.75244 10.09607 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.011776 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.291791 B = 2377.118471 C = 3437.900814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.090 0.910 9 C 0.105 3.895 10 C 0.041 3.959 11 F -0.143 7.143 12 C -0.131 4.131 13 C -0.214 4.214 14 C -0.082 4.082 15 C -0.185 4.185 16 C 0.007 3.993 17 Br -0.207 7.207 18 H 0.285 0.715 19 H 0.101 0.899 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -4.278 -2.049 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.108 0.892 9 C 0.101 3.899 10 C 0.021 3.979 11 F -0.121 7.121 12 C -0.151 4.151 13 C -0.234 4.234 14 C -0.101 4.101 15 C -0.188 4.188 16 C -0.105 4.105 17 Br -0.128 7.128 18 H 0.096 0.904 19 H 0.119 0.881 20 H 0.118 0.882 21 H 0.115 0.885 22 H 0.102 0.898 23 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.380 -4.186 -1.837 6.331 hybrid contribution -0.258 1.036 0.006 1.068 sum 4.122 -3.149 -1.831 5.501 Atomic orbital electron populations 1.69760 1.07845 1.30083 1.31859 1.25835 0.94610 1.01347 0.92319 0.86332 0.80914 0.80609 0.79188 1.19451 1.20014 1.18190 1.19441 0.99315 0.91036 1.39319 0.89180 1.17319 0.90480 0.92735 0.89363 1.17813 1.03416 0.80407 0.96289 1.91333 1.92537 1.47193 1.81084 1.20649 1.00727 0.92672 1.01049 1.20138 1.05131 0.96136 1.01982 1.20425 0.96787 0.96092 0.96794 1.19161 1.04392 0.94142 1.01076 1.23197 0.85152 1.04947 0.97253 1.97255 1.28938 1.96824 1.89778 0.90447 0.88058 0.88247 0.88542 0.89752 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.00 11.12 55.55 0.62 -19.38 14 2 C 0.08 1.99 4.50 -17.34 -0.08 1.92 14 3 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 14 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 14 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 7 C -0.46 -11.74 7.72 -37.79 -0.29 -12.03 14 8 H 0.09 2.21 7.39 -52.48 -0.39 1.82 14 9 C 0.11 2.66 5.40 -106.76 -0.58 2.09 14 10 C 0.04 1.06 6.69 -38.64 -0.26 0.80 14 11 F -0.14 -3.83 14.26 2.25 0.03 -3.80 14 12 C -0.13 -2.99 10.01 -39.59 -0.40 -3.39 14 13 C -0.21 -4.49 10.05 -39.31 -0.39 -4.89 14 14 C -0.08 -1.70 9.68 -39.65 -0.38 -2.08 14 15 C -0.19 -4.13 5.25 -103.93 -0.55 -4.68 14 16 C 0.01 0.13 6.17 36.01 0.22 0.36 14 17 Br -0.21 -3.82 33.92 -68.01 -2.31 -6.13 14 18 H 0.28 6.78 8.30 -40.82 -0.34 6.44 14 19 H 0.10 2.08 8.06 -52.49 -0.42 1.66 14 20 H 0.10 1.79 8.06 -52.49 -0.42 1.37 14 21 H 0.10 1.74 8.06 -52.49 -0.42 1.31 14 22 H 0.08 1.39 8.09 -51.93 -0.42 0.97 14 23 H 0.11 2.08 6.97 -51.93 -0.36 1.72 14 LS Contribution 230.60 15.07 3.48 3.48 Total: -1.00 -26.42 230.60 -7.49 -33.91 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -1.57 Total: 0.02 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.70 Total: -21.91 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.62 Total: -19.38 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.03 Total: -3.80 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 35 Polarization: -3.82 SS G_CDS: -2.31 Total: -6.13 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -26.42 -7.49 -33.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238539373.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.058 kcal (2) G-P(sol) polarization free energy of solvation -26.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds