Wall clock time and date at job start Mon Mar 30 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86804 * 120.00013 * 2 1 4 4 H 1.48500 * 109.46950 * 269.99817 * 3 2 1 5 5 H 1.48500 * 109.46936 * 29.99911 * 3 2 1 6 6 H 1.48504 * 109.46987 * 150.00198 * 3 2 1 7 7 C 1.39937 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00275 * 159.84565 * 7 2 1 9 9 C 1.41292 * 119.99979 * 339.84628 * 7 2 1 10 10 C 1.41009 * 120.26306 * 323.59832 * 9 7 2 11 11 F 1.35104 * 120.16105 * 359.97438 * 10 9 7 12 12 C 1.37943 * 119.67518 * 179.97438 * 10 9 7 13 13 C 1.38508 * 120.21788 * 0.02562 * 12 10 9 14 14 C 1.38699 * 120.54107 * 0.02562 * 13 12 10 15 15 C 1.37576 * 120.31891 * 359.68580 * 14 13 12 16 16 C 1.50708 * 120.11189 * 180.30419 * 15 14 13 17 17 Br 1.96596 * 109.47134 * 270.28211 * 16 15 14 18 18 H 0.96998 * 120.00150 * 359.97438 * 1 2 3 19 19 H 1.07993 * 119.88812 * 179.97438 * 12 10 9 20 20 H 1.07994 * 119.73282 * 179.97438 * 13 12 10 21 21 H 1.08001 * 119.83809 * 179.97438 * 14 13 12 22 22 H 1.09000 * 109.46688 * 30.28756 * 16 15 14 23 23 H 1.08996 * 109.46694 * 150.27826 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4402 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0386 -1.2407 -0.3217 9 6 1.3666 -2.3979 0.4227 10 6 0.4366 -2.3644 1.4821 11 9 0.1539 -1.1969 2.1004 12 6 -0.1830 -3.5294 1.8840 13 6 0.1064 -4.7270 1.2512 14 6 1.0204 -4.7705 0.2089 15 6 1.6469 -3.6209 -0.2139 16 6 2.6342 -3.6724 -1.3514 17 35 4.4360 -4.0090 -0.6406 18 1 -0.4850 0.8400 0.0004 19 1 -0.8955 -3.5078 2.6952 20 1 -0.3830 -5.6345 1.5725 21 1 1.2379 -5.7106 -0.2763 22 1 2.3580 -4.4743 -2.0361 23 1 2.6253 -2.7212 -1.8835 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238539373.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:20 Heat of formation + Delta-G solvation = -49.919718 kcal Electronic energy + Delta-G solvation = -12048.123470 eV Core-core repulsion = 9627.772999 eV Total energy + Delta-G solvation = -2420.350471 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.94988 -39.35585 -35.52184 -33.66255 -31.43154 -30.41813 -27.49483 -26.27234 -22.92412 -21.70576 -19.26998 -17.46048 -17.22533 -16.52626 -15.98219 -15.70668 -14.70630 -14.43864 -14.31941 -13.96007 -13.38886 -13.10676 -12.94137 -12.82656 -12.34473 -12.16874 -11.91384 -11.42187 -10.91781 -10.55239 -10.49814 -9.30814 -9.03425 -8.69790 -6.39669 0.45137 0.93063 1.37151 1.41556 1.46156 1.51407 2.20152 2.73225 3.51702 3.98792 4.16804 4.27034 4.47054 4.68776 4.78482 4.95419 5.16846 5.30747 5.62739 5.73754 5.92950 6.01895 6.25444 6.48853 6.85617 6.92463 8.31273 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.011776 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.291791 B = 2377.118471 C = 3437.900814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.005 4.005 11 F -0.160 7.160 12 C -0.138 4.138 13 C -0.204 4.204 14 C -0.085 4.085 15 C -0.185 4.185 16 C 0.008 3.992 17 Br -0.194 7.194 18 H 0.287 0.713 19 H 0.118 0.882 20 H 0.136 0.864 21 H 0.133 0.867 22 H 0.116 0.884 23 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -5.703 -2.530 7.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.107 0.893 9 C 0.072 3.928 10 C -0.025 4.025 11 F -0.139 7.139 12 C -0.158 4.158 13 C -0.223 4.223 14 C -0.104 4.104 15 C -0.187 4.187 16 C -0.105 4.105 17 Br -0.115 7.115 18 H 0.097 0.903 19 H 0.136 0.864 20 H 0.154 0.846 21 H 0.151 0.849 22 H 0.134 0.866 23 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.911 -5.624 -2.320 7.819 hybrid contribution -0.418 1.256 0.165 1.334 sum 4.494 -4.368 -2.155 6.627 Atomic orbital electron populations 1.69814 1.09115 1.30767 1.33957 1.26554 0.95178 1.04160 0.91651 0.85437 0.79303 0.76937 0.79657 1.18069 1.19862 1.18491 1.19575 0.99441 0.91960 1.40962 0.89311 1.17690 0.91181 0.94088 0.89825 1.18303 1.05581 0.80851 0.97747 1.91269 1.92869 1.48303 1.81472 1.20973 1.00709 0.92523 1.01574 1.20641 1.04153 0.96624 1.00928 1.20872 0.95908 0.97017 0.96577 1.19558 1.04395 0.93662 1.01114 1.23206 0.84916 1.05839 0.96549 1.97252 1.27727 1.96654 1.89832 0.90288 0.86434 0.84571 0.84898 0.86576 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.20 11.12 21.83 0.24 -42.96 14 2 C 0.04 2.11 4.50 85.25 0.38 2.50 14 3 Si 0.97 39.19 29.60 68.60 2.03 41.22 14 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 14 7 C -0.49 -25.27 7.72 23.43 0.18 -25.09 14 8 H 0.09 4.41 7.39 -2.91 -0.02 4.39 14 9 C 0.08 3.86 5.40 -21.25 -0.11 3.75 14 10 C 0.00 -0.24 6.69 22.88 0.15 -0.08 14 11 F -0.16 -8.88 14.26 44.97 0.64 -8.24 14 12 C -0.14 -6.16 10.01 22.26 0.22 -5.93 14 13 C -0.20 -7.92 10.05 22.44 0.23 -7.69 14 14 C -0.08 -3.24 9.68 22.22 0.22 -3.02 14 15 C -0.19 -7.95 5.25 -19.42 -0.10 -8.05 14 16 C 0.01 0.28 6.17 71.24 0.44 0.72 14 17 Br -0.19 -6.75 33.92 -20.37 -0.69 -7.45 14 18 H 0.29 14.10 8.30 -92.71 -0.77 13.33 14 19 H 0.12 4.70 8.06 -2.91 -0.02 4.67 14 20 H 0.14 4.25 8.06 -2.91 -0.02 4.23 14 21 H 0.13 4.11 8.06 -2.91 -0.02 4.09 14 22 H 0.12 3.44 8.09 -2.39 -0.02 3.42 14 23 H 0.09 3.67 6.97 -2.39 -0.02 3.65 14 Total: -1.00 -56.70 230.60 5.05 -51.64 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.22 Total: 8.68 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 1.60 Total: -42.90 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.24 Total: -42.96 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.64 Total: -8.24 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 35 Polarization: -6.75 SS G_CDS: -0.69 Total: -7.45 kcal Total: -56.70 5.05 -51.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238539373.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.724 kcal (2) G-P(sol) polarization free energy of solvation -56.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds