Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39655 * 120.74851 * 26.88189 * 3 2 1 5 5 Cl 1.73603 * 119.63033 * 359.97422 * 4 3 2 6 6 N 1.31755 * 120.73475 * 179.97438 * 4 3 2 7 7 C 1.32201 * 122.50855 * 359.97303 * 6 4 3 8 8 C 1.37591 * 121.41767 * 0.02562 * 7 6 4 9 9 C 1.50708 * 120.47713 * 179.72684 * 8 7 6 10 10 F 1.39897 * 109.47103 * 22.59206 * 9 8 7 11 11 F 1.39901 * 109.47011 * 142.59444 * 9 8 7 12 12 C 1.41073 * 119.04720 * 359.97438 * 8 7 6 13 13 C 1.40929 * 121.10900 * 179.97438 * 12 8 7 14 14 H 1.08000 * 120.00138 * 317.50115 * 13 12 8 15 15 C 1.40328 * 119.99693 * 137.49950 * 13 12 8 16 16 N 1.30587 * 120.00015 * 338.91619 * 15 13 12 17 17 Si 1.86800 * 119.99535 * 158.91335 * 15 13 12 18 18 H 1.48503 * 109.47498 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46840 * 120.00360 * 17 15 13 20 20 H 1.48501 * 109.47107 * 240.00038 * 17 15 13 21 21 H 1.07999 * 119.28994 * 179.97438 * 7 6 4 22 22 H 1.08999 * 109.46766 * 262.59312 * 9 8 7 23 23 H 0.97003 * 119.99347 * 176.31094 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2825 -1.0696 -0.5427 5 17 2.4250 -2.4163 -1.2244 6 7 4.6000 -1.0685 -0.5430 7 6 5.3098 -0.0731 -0.0398 8 6 4.7042 1.0289 0.5189 9 6 5.5341 2.1487 1.0920 10 9 6.8091 2.1260 0.5166 11 9 4.9190 3.3742 0.8144 12 6 3.2954 1.0930 0.5523 13 6 2.6300 2.2008 1.1145 14 1 2.9833 2.6300 2.0404 15 6 1.5085 2.7462 0.4712 16 7 1.3171 2.5304 -0.8025 17 14 0.2892 3.7808 1.4368 18 1 0.7309 3.8749 2.8515 19 1 0.2206 5.1426 0.8486 20 1 -1.0529 3.1480 1.3778 21 1 6.3881 -0.1265 -0.0670 22 1 5.6202 2.0216 2.1711 23 1 0.5149 2.8621 -1.2353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238546167.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = -76.934248 kcal Electronic energy + Delta-G solvation = -16692.498230 eV Core-core repulsion = 13394.236453 eV Total energy + Delta-G solvation = -3298.261777 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.60437 -47.61123 -40.74759 -37.63781 -37.40989 -35.88729 -33.49207 -32.44228 -28.66190 -26.84391 -24.70161 -23.09848 -20.14352 -19.26927 -18.32705 -18.04593 -17.51222 -17.02357 -16.71777 -16.62908 -15.41809 -14.80428 -14.44735 -14.28643 -14.05047 -13.95402 -13.89496 -13.65116 -13.54326 -13.21126 -13.00391 -12.76992 -12.43337 -12.30242 -12.09362 -11.90725 -11.24803 -10.37573 -10.15862 -9.74397 -9.04164 -6.87108 -0.13560 0.49570 0.83953 1.29521 1.37755 1.44591 2.02877 2.04234 2.21112 2.61301 3.07988 3.30296 3.38893 3.66676 3.88262 4.13261 4.33320 4.47423 4.54788 4.87884 5.05254 5.33265 5.58413 6.01546 6.31002 6.47040 6.87883 7.04839 7.93737 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.013271 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.597045 B = 2109.419727 C = 3771.606806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.323 3.677 3 C -0.169 4.169 4 C 0.248 3.752 5 Cl -0.047 7.047 6 N -0.566 5.566 7 C 0.176 3.824 8 C -0.310 4.310 9 C 0.340 3.660 10 F -0.211 7.211 11 F -0.206 7.206 12 C 0.178 3.822 13 C -0.447 4.447 14 H 0.117 0.883 15 C 0.053 3.947 16 N -0.784 5.784 17 Si 0.951 3.049 18 H -0.235 1.235 19 H -0.259 1.259 20 H -0.280 1.280 21 H 0.184 0.816 22 H 0.148 0.852 23 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 0.004 4.223 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C 0.011 3.989 3 C -0.180 4.180 4 C 0.081 3.919 5 Cl -0.019 7.019 6 N -0.282 5.282 7 C 0.026 3.974 8 C -0.315 4.315 9 C 0.286 3.714 10 F -0.192 7.192 11 F -0.187 7.187 12 C 0.168 3.832 13 C -0.476 4.476 14 H 0.134 0.866 15 C -0.169 4.169 16 N -0.406 5.406 17 Si 0.772 3.228 18 H -0.157 1.157 19 H -0.184 1.184 20 H -0.206 1.206 21 H 0.201 0.799 22 H 0.165 0.835 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.512 -0.705 3.556 5.788 hybrid contribution -0.856 0.989 -0.004 1.308 sum 3.656 0.284 3.552 5.105 Atomic orbital electron populations 1.80914 1.12859 1.11644 1.12237 1.25038 0.92270 0.90221 0.91362 1.16855 0.85297 0.97559 1.18265 1.21516 0.90369 0.87152 0.92832 1.98347 1.74641 1.45540 1.83351 1.66946 1.04864 1.30615 1.25803 1.22386 1.00172 0.86257 0.88613 1.21507 0.94506 1.00614 1.14898 1.20073 0.74243 0.78756 0.98346 1.92915 1.41727 1.96561 1.88010 1.92989 1.83378 1.46613 1.95710 1.17421 0.90267 0.90213 0.85334 1.19913 1.09548 1.10025 1.08072 0.86559 1.26618 0.98504 0.96955 0.94834 1.69652 1.25124 1.35056 1.10811 0.85549 0.77693 0.78363 0.81212 1.15697 1.18369 1.20564 0.79934 0.83526 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.47 18.49 19.00 0.35 -24.12 14 2 C 0.32 15.51 10.75 88.33 0.95 16.46 14 3 C -0.17 -7.75 5.50 -20.66 -0.11 -7.86 14 4 C 0.25 10.51 7.31 85.05 0.62 11.13 14 5 Cl -0.05 -1.81 28.18 -2.72 -0.08 -1.89 14 6 N -0.57 -22.59 10.29 -186.07 -1.92 -24.50 14 7 C 0.18 6.26 10.54 84.48 0.89 7.15 14 8 C -0.31 -11.66 5.79 -19.32 -0.11 -11.77 14 9 C 0.34 10.65 5.33 71.24 0.38 11.03 14 10 F -0.21 -6.33 16.29 44.97 0.73 -5.60 14 11 F -0.21 -7.72 15.06 44.97 0.68 -7.04 14 12 C 0.18 7.82 5.30 -20.89 -0.11 7.71 14 13 C -0.45 -19.70 6.61 23.44 0.16 -19.54 14 14 H 0.12 4.66 7.52 -2.91 -0.02 4.64 14 15 C 0.05 2.41 4.10 85.39 0.35 2.76 14 16 N -0.78 -38.16 11.24 21.89 0.25 -37.92 14 17 Si 0.95 35.96 29.61 68.60 2.03 37.99 14 18 H -0.23 -8.12 7.11 99.48 0.71 -7.41 14 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 14 20 H -0.28 -11.32 7.11 99.48 0.71 -10.61 14 21 H 0.18 5.15 7.40 -2.91 -0.02 5.13 14 22 H 0.15 3.40 8.14 -2.39 -0.02 3.38 14 23 H 0.29 13.69 8.29 -92.71 -0.77 12.92 14 Total: -1.00 -52.97 243.08 6.35 -46.62 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.29 Total: -0.63 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 3.01 Total: 17.08 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.32 Total: -86.53 kcal Atomic # 9 Polarization: -14.05 SS G_CDS: 1.41 Total: -12.64 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -52.97 6.35 -46.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546167.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.313 kcal (2) G-P(sol) polarization free energy of solvation -52.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds