Wall clock time and date at job start Mon Mar 30 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.33021 * 119.59667 * 149.53188 * 3 2 1 5 5 C 1.31670 * 122.22534 * 180.02562 * 4 3 2 6 6 C 1.38197 * 121.15181 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 120.48170 * 179.97438 * 6 5 4 8 8 C 1.41199 * 119.04278 * 0.02562 * 6 5 4 9 9 C 1.41435 * 120.99920 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00098 * 136.10464 * 9 8 6 11 11 C 1.40060 * 119.99860 * 315.84075 * 9 8 6 12 12 N 1.30734 * 119.99703 * 339.51186 * 11 9 8 13 13 Si 1.86800 * 120.00147 * 159.51885 * 11 9 8 14 14 H 1.48501 * 109.47121 * 89.99530 * 13 11 9 15 15 H 1.48504 * 109.47214 * 209.99365 * 13 11 9 16 16 H 1.48501 * 109.47136 * 329.99683 * 13 11 9 17 17 C 1.38945 * 119.60248 * 329.83714 * 3 2 1 18 18 C 1.50706 * 120.61368 * 359.97438 * 17 3 2 19 19 F 1.39901 * 109.46926 * 120.27042 * 18 17 3 20 20 F 1.39896 * 109.47227 * 240.26889 * 18 17 3 21 21 H 1.08002 * 119.42216 * 180.02562 * 5 4 3 22 22 H 0.97005 * 119.99594 * 185.63883 * 12 11 9 23 23 H 1.08994 * 109.46916 * 0.27516 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2245 0.9979 -0.5865 5 6 4.5398 1.0502 -0.6175 6 6 5.3086 0.0600 -0.0360 7 17 7.0417 0.1462 -0.0878 8 6 4.6642 -1.0235 0.5999 9 6 5.4105 -2.0593 1.2088 10 1 5.1225 -2.4331 2.1802 11 6 6.5197 -2.6039 0.5494 12 7 6.6417 -2.4690 -0.7452 13 14 7.8245 -3.5232 1.5198 14 1 7.4691 -4.9635 1.5861 15 1 9.1407 -3.3685 0.8495 16 1 7.9012 -2.9685 2.8952 17 6 3.2548 -1.0436 0.6070 18 6 2.5067 -2.1745 1.2647 19 9 2.8523 -3.3824 0.6492 20 9 2.8432 -2.2295 2.6215 21 1 5.0263 1.8816 -1.1060 22 1 7.3651 -2.9147 -1.2132 23 1 1.4343 -2.0085 1.1627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238555697.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:19 Heat of formation + Delta-G solvation = -53.503821 kcal Electronic energy + Delta-G solvation = -16749.126345 eV Core-core repulsion = 13451.880588 eV Total energy + Delta-G solvation = -3297.245758 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.14299 -46.11815 -39.17242 -36.25596 -35.33635 -34.29807 -31.90364 -30.74176 -26.90832 -25.35511 -23.34926 -21.25579 -19.20491 -17.26217 -16.67946 -16.41373 -16.37197 -15.35023 -15.09254 -14.41119 -13.93960 -13.39105 -13.05170 -13.00304 -12.60558 -12.51198 -12.41733 -12.26955 -11.86218 -11.74137 -11.45626 -11.10700 -10.79036 -10.53572 -10.42071 -10.09715 -9.30766 -8.75675 -8.49392 -7.81556 -7.16760 -5.01097 1.33611 2.19700 2.90198 2.91008 2.95678 3.01390 3.33658 3.43048 3.73437 4.16975 4.31432 4.49961 4.81357 4.88130 5.35103 5.62359 5.85542 6.02878 6.21912 6.45425 6.80756 6.98709 7.17266 7.75271 7.86308 8.09026 8.35478 8.65252 9.79791 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.010757 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.685020 B = 2602.278078 C = 3544.731411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.282 3.718 3 C 0.220 3.780 4 N -0.527 5.527 5 C 0.127 3.873 6 C -0.109 4.109 7 Cl -0.069 7.069 8 C 0.157 3.843 9 C -0.437 4.437 10 H 0.103 0.897 11 C 0.089 3.911 12 N -0.747 5.747 13 Si 0.908 3.092 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.254 1.254 17 C -0.254 4.254 18 C 0.340 3.660 19 F -0.193 7.193 20 F -0.203 7.203 21 H 0.148 0.852 22 H 0.291 0.709 23 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 0.380 1.664 2.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.034 4.034 3 C 0.083 3.917 4 N -0.242 5.242 5 C -0.027 4.027 6 C -0.140 4.140 7 Cl -0.040 7.040 8 C 0.148 3.852 9 C -0.466 4.466 10 H 0.120 0.880 11 C -0.137 4.137 12 N -0.369 5.369 13 Si 0.731 3.269 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.177 1.177 17 C -0.264 4.264 18 C 0.285 3.715 19 F -0.174 7.174 20 F -0.185 7.185 21 H 0.165 0.835 22 H 0.103 0.897 23 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.147 1.068 1.048 1.503 hybrid contribution 1.805 -1.166 0.565 2.222 sum 1.658 -0.098 1.612 2.315 Atomic orbital electron populations 1.81145 1.11758 1.08448 1.08854 1.25481 0.92248 0.92670 0.92989 1.15806 0.84659 0.92801 0.98406 1.67508 1.09310 1.24893 1.22515 1.22044 0.88014 0.96921 0.95681 1.22228 0.84460 0.97585 1.09755 1.98245 1.11046 1.97754 1.96965 1.17124 0.88686 0.91391 0.87953 1.19662 1.07656 1.14796 1.04451 0.87951 1.25795 0.97297 0.95762 0.94801 1.69711 1.28442 1.30098 1.08651 0.86240 0.79381 0.79962 0.81304 1.19018 1.19633 1.17746 1.21048 0.95043 0.98388 1.11946 1.19731 0.96547 0.80833 0.74395 1.92997 1.94264 1.47474 1.82694 1.92947 1.94435 1.96666 1.34404 0.83487 0.89731 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.18 18.54 41.83 0.78 -7.41 14 2 C 0.28 5.46 13.73 -22.47 -0.31 5.15 14 3 C 0.22 4.54 6.58 -85.16 -0.56 3.98 14 4 N -0.53 -10.93 10.25 -11.28 -0.12 -11.05 14 5 C 0.13 2.53 10.96 -17.64 -0.19 2.34 14 6 C -0.11 -2.35 5.99 -38.47 -0.23 -2.58 14 7 Cl -0.07 -1.39 25.10 -51.86 -1.30 -2.70 14 8 C 0.16 3.60 5.27 -106.53 -0.56 3.04 14 9 C -0.44 -10.12 7.34 -37.68 -0.28 -10.40 14 10 H 0.10 2.37 6.77 -52.49 -0.36 2.01 14 11 C 0.09 1.97 3.86 -17.34 -0.07 1.90 14 12 N -0.75 -16.95 11.14 55.55 0.62 -16.33 14 13 Si 0.91 17.16 29.61 -169.99 -5.03 12.12 14 14 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 15 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 16 H -0.25 -4.79 7.11 56.52 0.40 -4.39 14 17 C -0.25 -5.46 5.47 -103.33 -0.56 -6.03 14 18 C 0.34 6.74 4.90 36.01 0.18 6.91 14 19 F -0.19 -4.12 16.66 2.25 0.04 -4.09 14 20 F -0.20 -4.09 15.94 2.25 0.04 -4.05 14 21 H 0.15 2.49 8.06 -52.49 -0.42 2.07 14 22 H 0.29 6.06 8.30 -40.82 -0.34 5.72 14 23 H 0.09 1.56 6.47 -51.93 -0.34 1.22 14 LS Contribution 242.24 15.07 3.65 3.65 Total: -1.00 -23.93 242.24 -4.17 -28.09 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -0.25 Total: -2.56 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.59 Total: 4.31 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 1.28 Total: -34.78 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.30 Total: -2.70 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -23.93 -4.17 -28.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238555697.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.412 kcal (2) G-P(sol) polarization free energy of solvation -23.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds