Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.33021 * 119.59667 * 149.53188 * 3 2 1 5 5 C 1.31670 * 122.22534 * 180.02562 * 4 3 2 6 6 C 1.38197 * 121.15181 * 0.02562 * 5 4 3 7 7 Cl 1.73595 * 120.48170 * 179.97438 * 6 5 4 8 8 C 1.41199 * 119.04278 * 0.02562 * 6 5 4 9 9 C 1.41435 * 120.99920 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00098 * 136.10464 * 9 8 6 11 11 C 1.40060 * 119.99860 * 315.84075 * 9 8 6 12 12 N 1.30734 * 119.99703 * 339.51186 * 11 9 8 13 13 Si 1.86800 * 120.00147 * 159.51885 * 11 9 8 14 14 H 1.48501 * 109.47121 * 89.99530 * 13 11 9 15 15 H 1.48504 * 109.47214 * 209.99365 * 13 11 9 16 16 H 1.48501 * 109.47136 * 329.99683 * 13 11 9 17 17 C 1.38945 * 119.60248 * 329.83714 * 3 2 1 18 18 C 1.50706 * 120.61368 * 359.97438 * 17 3 2 19 19 F 1.39901 * 109.46926 * 120.27042 * 18 17 3 20 20 F 1.39896 * 109.47227 * 240.26889 * 18 17 3 21 21 H 1.08002 * 119.42216 * 180.02562 * 5 4 3 22 22 H 0.97005 * 119.99594 * 185.63883 * 12 11 9 23 23 H 1.08994 * 109.46916 * 0.27516 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2245 0.9979 -0.5865 5 6 4.5398 1.0502 -0.6175 6 6 5.3086 0.0600 -0.0360 7 17 7.0417 0.1462 -0.0878 8 6 4.6642 -1.0235 0.5999 9 6 5.4105 -2.0593 1.2088 10 1 5.1225 -2.4331 2.1802 11 6 6.5197 -2.6039 0.5494 12 7 6.6417 -2.4690 -0.7452 13 14 7.8245 -3.5232 1.5198 14 1 7.4691 -4.9635 1.5861 15 1 9.1407 -3.3685 0.8495 16 1 7.9012 -2.9685 2.8952 17 6 3.2548 -1.0436 0.6070 18 6 2.5067 -2.1745 1.2647 19 9 2.8523 -3.3824 0.6492 20 9 2.8432 -2.2295 2.6215 21 1 5.0263 1.8816 -1.1060 22 1 7.3651 -2.9147 -1.2132 23 1 1.4343 -2.0085 1.1627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238555697.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -65.291671 kcal Electronic energy + Delta-G solvation = -16749.637505 eV Core-core repulsion = 13451.880588 eV Total energy + Delta-G solvation = -3297.756917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.75862 -47.74589 -40.80641 -37.83514 -36.94225 -35.95182 -33.54833 -32.38180 -28.56387 -26.98498 -24.98725 -22.88144 -20.83778 -18.88928 -18.32093 -18.03548 -18.00414 -16.95104 -16.71668 -15.98220 -15.54633 -14.98696 -14.68098 -14.58123 -14.19655 -14.14330 -14.01232 -13.85483 -13.47562 -13.35295 -13.02198 -12.76104 -12.38675 -12.04386 -12.00792 -11.69462 -10.95541 -10.40384 -10.14324 -9.45456 -8.81211 -6.72828 -0.29914 0.54308 1.33977 1.39584 1.43869 1.53397 1.71542 1.84188 2.18945 2.55867 2.67719 2.94465 3.15557 3.31237 3.77580 4.07103 4.25397 4.39832 4.60735 4.81189 5.15262 5.32881 5.56169 6.14184 6.17933 6.38654 6.67112 7.01233 8.17434 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.010757 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.685020 B = 2602.278078 C = 3544.731411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.288 3.712 3 C 0.221 3.779 4 N -0.530 5.530 5 C 0.133 3.867 6 C -0.125 4.125 7 Cl -0.061 7.061 8 C 0.137 3.863 9 C -0.461 4.461 10 H 0.094 0.906 11 C 0.064 3.936 12 N -0.772 5.772 13 Si 0.956 3.044 14 H -0.263 1.263 15 H -0.263 1.263 16 H -0.255 1.255 17 C -0.266 4.266 18 C 0.340 3.660 19 F -0.204 7.204 20 F -0.206 7.206 21 H 0.178 0.822 22 H 0.298 0.702 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 0.644 1.623 2.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.028 4.028 3 C 0.085 3.915 4 N -0.246 5.246 5 C -0.021 4.021 6 C -0.157 4.157 7 Cl -0.032 7.032 8 C 0.129 3.871 9 C -0.489 4.489 10 H 0.112 0.888 11 C -0.159 4.159 12 N -0.394 5.394 13 Si 0.777 3.223 14 H -0.188 1.188 15 H -0.187 1.187 16 H -0.179 1.179 17 C -0.276 4.276 18 C 0.285 3.715 19 F -0.185 7.185 20 F -0.187 7.187 21 H 0.195 0.805 22 H 0.109 0.891 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.075 1.335 1.005 1.673 hybrid contribution 1.719 -1.178 0.549 2.155 sum 1.644 0.157 1.555 2.268 Atomic orbital electron populations 1.81162 1.11487 1.08309 1.08652 1.25190 0.91809 0.92744 0.93062 1.15861 0.85148 0.92546 0.97987 1.67583 1.09721 1.24874 1.22401 1.22483 0.87691 0.97154 0.94769 1.22404 0.85212 0.97814 1.10242 1.98235 1.10299 1.97712 1.96944 1.17447 0.89505 0.91813 0.88377 1.19719 1.08956 1.15723 1.04532 0.88833 1.26307 0.98180 0.96124 0.95296 1.69724 1.29194 1.31069 1.09453 0.85532 0.77708 0.78970 0.80126 1.18802 1.18748 1.17883 1.21256 0.94979 0.99160 1.12197 1.19929 0.97625 0.79942 0.73985 1.92971 1.94477 1.48109 1.82919 1.92936 1.94588 1.96618 1.34574 0.80491 0.89111 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -15.28 18.54 19.00 0.35 -14.92 14 2 C 0.29 10.62 13.73 88.33 1.21 11.83 14 3 C 0.22 8.82 6.58 40.38 0.27 9.08 14 4 N -0.53 -21.11 10.25 -189.61 -1.94 -23.05 14 5 C 0.13 5.06 10.96 84.71 0.93 5.99 14 6 C -0.13 -5.30 5.99 22.99 0.14 -5.16 14 7 Cl -0.06 -2.39 25.10 -2.72 -0.07 -2.46 14 8 C 0.14 6.23 5.27 -21.10 -0.11 6.12 14 9 C -0.46 -21.27 7.34 23.50 0.17 -21.09 14 10 H 0.09 4.36 6.77 -2.91 -0.02 4.34 14 11 C 0.06 2.80 3.86 85.30 0.33 3.13 14 12 N -0.77 -34.56 11.14 21.84 0.24 -34.32 14 13 Si 0.96 34.42 29.61 68.60 2.03 36.45 14 14 H -0.26 -9.33 7.11 99.48 0.71 -8.63 14 15 H -0.26 -9.05 7.11 99.48 0.71 -8.34 14 16 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 17 C -0.27 -11.23 5.47 -19.03 -0.10 -11.33 14 18 C 0.34 13.18 4.90 71.24 0.35 13.53 14 19 F -0.20 -8.60 16.66 44.97 0.75 -7.85 14 20 F -0.21 -8.16 15.94 44.97 0.72 -7.44 14 21 H 0.18 5.56 8.06 -2.91 -0.02 5.53 14 22 H 0.30 12.17 8.30 -92.70 -0.77 11.41 14 23 H 0.12 3.86 6.47 -2.39 -0.02 3.84 14 Total: -1.00 -48.36 242.24 6.55 -41.80 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.29 Total: -0.30 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 3.18 Total: 12.09 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.35 Total: -72.29 kcal Atomic # 9 Polarization: -16.76 SS G_CDS: 1.47 Total: -15.29 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.46 kcal Total: -48.36 6.55 -41.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238555697.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.488 kcal (2) G-P(sol) polarization free energy of solvation -48.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds