Wall clock time and date at job start Mon Mar 30 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 N 1.33006 * 119.61259 * 298.74602 * 3 2 1 5 5 C 1.31815 * 122.18876 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.42952 * 180.02562 * 5 4 3 7 7 C 1.38159 * 121.14261 * 359.71296 * 5 4 3 8 8 C 1.40997 * 119.07026 * 0.58474 * 7 5 4 9 9 C 1.41513 * 120.97961 * 179.70721 * 8 7 5 10 10 H 1.07998 * 119.99535 * 205.29093 * 9 8 7 11 11 C 1.40058 * 120.00111 * 25.28743 * 9 8 7 12 12 N 1.30727 * 119.99895 * 201.92890 * 11 9 8 13 13 Si 1.86800 * 120.00049 * 21.93294 * 11 9 8 14 14 H 1.48497 * 109.46738 * 263.24143 * 13 11 9 15 15 H 1.48504 * 109.47016 * 23.23727 * 13 11 9 16 16 H 1.48491 * 109.47339 * 143.24077 * 13 11 9 17 17 C 1.38941 * 119.61151 * 118.76734 * 3 2 1 18 18 C 1.50693 * 120.60875 * 0.02562 * 17 3 2 19 19 F 1.39901 * 109.47240 * 119.97791 * 18 17 3 20 20 F 1.39898 * 109.47256 * 239.97369 * 18 17 3 21 21 H 1.07997 * 120.46790 * 180.28648 * 7 5 4 22 22 H 0.96995 * 120.00049 * 353.04919 * 12 11 9 23 23 H 1.09004 * 109.47469 * 359.97438 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2255 -0.5552 1.0138 5 6 4.5423 -0.5835 1.0655 6 17 5.3269 -1.3286 2.4232 7 6 5.3090 -0.0362 0.0549 8 6 4.6641 0.5722 -1.0414 9 6 5.4098 1.1508 -2.0958 10 1 4.9772 1.9394 -2.6936 11 6 6.7087 0.7009 -2.3640 12 7 7.5466 1.4697 -3.0088 13 14 7.2438 -0.9978 -1.8004 14 1 7.9699 -0.8852 -0.5100 15 1 6.0477 -1.8596 -1.6217 16 1 8.1390 -1.5989 -2.8213 17 6 3.2543 0.5823 -1.0589 18 6 2.5056 1.2119 -2.2051 19 9 2.8458 2.5658 -2.2968 20 9 2.8467 0.5637 -3.3970 21 1 6.3873 -0.0696 0.1062 22 1 7.2413 2.3080 -3.3893 23 1 1.4332 1.1175 -2.0342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238555792.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:53 Heat of formation + Delta-G solvation = -74.102958 kcal Electronic energy + Delta-G solvation = -16600.133481 eV Core-core repulsion = 13301.994478 eV Total energy + Delta-G solvation = -3298.139003 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.89632 -47.87144 -41.06493 -38.00027 -37.51169 -36.33478 -33.81326 -32.96098 -28.55157 -27.13119 -25.18146 -22.77942 -21.34434 -19.35080 -18.89703 -18.21704 -18.14835 -17.13904 -16.83044 -15.93654 -15.54052 -15.38205 -14.92784 -14.76652 -14.34103 -14.28014 -14.24554 -14.00883 -13.96247 -13.54484 -12.95304 -12.50510 -12.35571 -12.17951 -12.12058 -11.53058 -11.32054 -10.73381 -10.45389 -9.98343 -9.61094 -7.07106 -0.47689 0.25468 0.71856 1.33622 1.37159 1.49335 1.65037 1.76951 2.06713 2.40789 2.45910 2.84628 3.01294 3.25699 3.59938 4.06667 4.13253 4.22968 4.42867 4.61356 5.02346 5.20019 5.25758 5.84111 5.99757 6.08622 6.33650 6.73122 7.68634 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.013148 C = 0.007674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.818348 B = 2129.033762 C = 3647.644736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.286 3.714 3 C 0.265 3.735 4 N -0.555 5.555 5 C 0.219 3.781 6 Cl -0.031 7.031 7 C -0.254 4.254 8 C 0.119 3.881 9 C -0.472 4.472 10 H 0.082 0.918 11 C 0.024 3.976 12 N -0.782 5.782 13 Si 1.075 2.925 14 H -0.241 1.241 15 H -0.256 1.256 16 H -0.269 1.269 17 C -0.284 4.284 18 C 0.337 3.663 19 F -0.209 7.209 20 F -0.204 7.204 21 H 0.140 0.860 22 H 0.294 0.706 23 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -2.933 2.812 4.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.031 4.031 3 C 0.129 3.871 4 N -0.273 5.273 5 C 0.060 3.940 6 Cl -0.002 7.002 7 C -0.277 4.277 8 C 0.111 3.889 9 C -0.501 4.501 10 H 0.100 0.900 11 C -0.199 4.199 12 N -0.402 5.402 13 Si 0.893 3.107 14 H -0.166 1.166 15 H -0.180 1.180 16 H -0.195 1.195 17 C -0.295 4.295 18 C 0.283 3.717 19 F -0.190 7.190 20 F -0.185 7.185 21 H 0.157 0.843 22 H 0.106 0.894 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.813 -4.254 3.627 5.877 hybrid contribution -0.193 1.845 -0.883 2.054 sum -2.006 -2.409 2.744 4.166 Atomic orbital electron populations 1.81190 1.11269 1.08023 1.07783 1.25036 0.91591 0.93429 0.93059 1.15400 0.84971 0.96153 0.90584 1.66634 1.09069 1.25113 1.26496 1.21056 0.88871 0.94772 0.89325 1.98350 1.77501 1.80537 1.43842 1.21873 1.00781 1.09843 0.95236 1.17519 0.90257 0.88769 0.92329 1.21026 1.00386 1.16389 1.12300 0.90025 1.28371 0.91588 1.06499 0.93409 1.70499 1.36197 1.11102 1.22383 0.83618 0.78312 0.70419 0.78346 1.16559 1.18007 1.19495 1.21056 0.95239 1.13880 0.99297 1.19976 0.98079 0.73591 0.80070 1.92945 1.94510 1.35052 1.96485 1.92969 1.94581 1.81464 1.49468 0.84280 0.89433 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -14.06 18.54 19.01 0.35 -13.71 14 2 C 0.29 9.99 13.73 88.33 1.21 11.21 14 3 C 0.27 10.14 6.58 40.38 0.27 10.40 14 4 N -0.55 -21.83 10.22 -180.63 -1.85 -23.68 14 5 C 0.22 8.38 7.26 84.68 0.61 8.99 14 6 Cl -0.03 -0.98 29.09 -2.72 -0.08 -1.06 14 7 C -0.25 -10.23 7.13 22.93 0.16 -10.07 14 8 C 0.12 5.17 5.19 -21.12 -0.11 5.06 14 9 C -0.47 -21.77 8.31 23.52 0.20 -21.57 14 10 H 0.08 4.01 6.41 -2.91 -0.02 3.99 14 11 C 0.02 1.08 5.40 85.30 0.46 1.54 14 12 N -0.78 -36.00 13.65 21.84 0.30 -35.71 14 13 Si 1.07 39.88 24.92 68.60 1.71 41.59 14 14 H -0.24 -8.03 6.69 99.48 0.67 -7.36 14 15 H -0.26 -9.50 6.88 99.48 0.68 -8.82 14 16 H -0.27 -9.62 7.11 99.48 0.71 -8.91 14 17 C -0.28 -11.47 5.47 -19.02 -0.10 -11.57 14 18 C 0.34 12.54 4.82 71.23 0.34 12.88 14 19 F -0.21 -8.27 15.83 44.97 0.71 -7.56 14 20 F -0.20 -8.09 16.62 44.97 0.75 -7.35 14 21 H 0.14 5.34 4.54 -2.91 -0.01 5.32 14 22 H 0.29 13.33 8.73 -92.71 -0.81 12.52 14 23 H 0.12 3.80 6.47 -2.38 -0.02 3.78 14 Total: -1.00 -46.20 239.58 6.14 -40.06 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.20 Total: 0.53 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 3.04 Total: 6.88 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.20 Total: -73.09 kcal Atomic # 9 Polarization: -16.36 SS G_CDS: 1.46 Total: -14.90 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.71 Total: 41.59 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -46.20 6.14 -40.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238555792.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.042 kcal (2) G-P(sol) polarization free energy of solvation -46.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds