Wall clock time and date at job start Mon Mar 30 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.40388 * 120.85380 * 145.23631 * 3 2 1 5 5 Cl 1.73596 * 120.32180 * 359.97438 * 4 3 2 6 6 C 1.38786 * 119.35538 * 180.02562 * 4 3 2 7 7 N 1.31378 * 121.13667 * 0.02562 * 6 4 3 8 8 C 1.33622 * 121.87551 * 359.97438 * 7 6 4 9 9 C 1.41355 * 119.74491 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99415 * 180.02562 * 9 8 7 11 11 C 1.40038 * 120.00091 * 0.02562 * 9 8 7 12 12 N 1.30741 * 119.99776 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99867 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47118 * 90.00021 * 13 11 9 15 15 H 1.48498 * 109.47011 * 209.99880 * 13 11 9 16 16 H 1.48499 * 109.47134 * 329.99501 * 13 11 9 17 17 C 1.39436 * 120.85238 * 325.51222 * 3 2 1 18 18 C 1.50704 * 120.58556 * 359.97438 * 17 3 2 19 19 F 1.39897 * 109.46925 * 120.23037 * 18 17 3 20 20 F 1.39903 * 109.47088 * 240.22920 * 18 17 3 21 21 H 1.07997 * 119.43051 * 179.97438 * 6 4 3 22 22 H 0.97004 * 119.99273 * 180.02562 * 12 11 9 23 23 H 1.08994 * 109.46848 * 0.22882 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2876 0.9910 -0.6872 5 17 2.4501 2.2397 -1.5549 6 6 4.6750 0.9615 -0.6669 7 7 5.3251 0.0232 -0.0167 8 6 4.6882 -0.9420 0.6529 9 6 5.4329 -1.9298 1.3368 10 1 4.9222 -2.7120 1.8790 11 6 6.8326 -1.8943 1.3113 12 7 7.4506 -0.9477 0.6546 13 14 7.8166 -3.1994 2.2157 14 1 8.0766 -4.3430 1.3048 15 1 9.1083 -2.6218 2.6662 16 1 7.0471 -3.6708 3.3950 17 6 3.2835 -0.9857 0.6778 18 6 2.5635 -2.0767 1.4278 19 9 2.9239 -3.3213 0.9003 20 9 2.9162 -2.0237 2.7806 21 1 5.2297 1.7226 -1.1955 22 1 8.4201 -0.9234 0.6366 23 1 1.4872 -1.9373 1.3271 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556378.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:52 Heat of formation + Delta-G solvation = -64.423883 kcal Electronic energy + Delta-G solvation = -16541.913197 eV Core-core repulsion = 13244.193910 eV Total energy + Delta-G solvation = -3297.719287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.83701 -47.78884 -40.61837 -37.90054 -37.27870 -35.66609 -33.75603 -32.27382 -28.52427 -26.98737 -24.99779 -22.83310 -20.87457 -18.94994 -18.30741 -18.06344 -17.87467 -16.97829 -16.57852 -15.83260 -15.40364 -15.32309 -14.70212 -14.52100 -14.19665 -14.19290 -14.10566 -13.79099 -13.41084 -13.10942 -12.94092 -12.81178 -12.56378 -12.05953 -11.98278 -11.78741 -11.22184 -10.54922 -9.91593 -9.71278 -8.57361 -6.79658 -0.17909 0.45319 1.34679 1.40998 1.44222 1.49012 1.56975 2.02368 2.18202 2.62679 2.66957 2.93007 3.36791 3.49109 3.72673 4.11639 4.24502 4.37544 4.66286 4.95714 5.00380 5.04103 5.52236 6.01794 6.18275 6.30131 6.60465 7.74519 8.17832 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.008831 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.478857 B = 3169.748979 C = 4189.728779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.272 3.728 3 C 0.082 3.918 4 C -0.196 4.196 5 Cl -0.077 7.077 6 C 0.171 3.829 7 N -0.480 5.480 8 C 0.241 3.759 9 C -0.405 4.405 10 H 0.098 0.902 11 C 0.026 3.974 12 N -0.718 5.718 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.260 1.260 16 H -0.258 1.258 17 C -0.300 4.300 18 C 0.340 3.660 19 F -0.205 7.205 20 F -0.205 7.205 21 H 0.169 0.831 22 H 0.293 0.707 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 -0.045 0.023 0.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.043 4.043 3 C 0.072 3.928 4 C -0.230 4.230 5 Cl -0.049 7.049 6 C -0.001 4.001 7 N -0.192 5.192 8 C 0.120 3.880 9 C -0.433 4.433 10 H 0.116 0.884 11 C -0.201 4.201 12 N -0.337 5.337 13 Si 0.801 3.199 14 H -0.184 1.184 15 H -0.184 1.184 16 H -0.181 1.181 17 C -0.309 4.309 18 C 0.285 3.715 19 F -0.186 7.186 20 F -0.187 7.187 21 H 0.186 0.814 22 H 0.104 0.896 23 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.398 0.054 -0.041 1.399 hybrid contribution -0.134 -0.254 0.169 0.334 sum -1.532 -0.201 0.128 1.551 Atomic orbital electron populations 1.81142 1.11718 1.08393 1.08589 1.25568 0.92470 0.93037 0.93241 1.15512 0.83474 0.95496 0.98319 1.21411 0.93242 0.97385 1.10972 1.98273 1.78414 1.52366 1.75821 1.23125 0.88292 0.95611 0.93030 1.68871 1.36725 1.03266 1.10297 1.18487 0.87286 0.91698 0.90552 1.20329 0.92456 1.07488 1.23027 0.88425 1.26982 0.98964 0.98594 0.95548 1.70092 1.11532 1.26649 1.25471 0.85168 0.77706 0.77831 0.79150 1.18372 1.18371 1.18148 1.20980 0.95618 1.01761 1.12531 1.19857 0.97529 0.79168 0.74909 1.92952 1.94076 1.45105 1.86487 1.92954 1.94246 1.96441 1.35019 0.81425 0.89567 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -15.58 18.54 19.01 0.35 -15.23 14 2 C 0.27 10.05 12.84 88.33 1.13 11.18 14 3 C 0.08 3.25 5.75 -21.22 -0.12 3.12 14 4 C -0.20 -7.47 6.40 22.92 0.15 -7.33 14 5 Cl -0.08 -2.52 28.13 -2.72 -0.08 -2.60 14 6 C 0.17 6.84 10.97 84.89 0.93 7.77 14 7 N -0.48 -22.59 7.83 -189.22 -1.48 -24.07 14 8 C 0.24 11.50 6.54 40.20 0.26 11.77 14 9 C -0.40 -19.28 8.19 23.47 0.19 -19.09 14 10 H 0.10 4.55 5.50 -2.91 -0.02 4.54 14 11 C 0.03 1.14 5.50 85.29 0.47 1.61 14 12 N -0.72 -32.92 11.46 21.84 0.25 -32.67 14 13 Si 0.98 33.65 29.56 68.60 2.03 35.68 14 14 H -0.26 -8.66 7.11 99.48 0.71 -7.95 14 15 H -0.26 -8.33 7.11 99.48 0.71 -7.63 14 16 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 17 C -0.30 -12.84 5.47 -19.01 -0.10 -12.95 14 18 C 0.34 13.21 4.80 71.24 0.34 13.55 14 19 F -0.20 -8.26 16.05 44.97 0.72 -7.54 14 20 F -0.21 -8.30 16.04 44.97 0.72 -7.58 14 21 H 0.17 5.71 8.06 -2.91 -0.02 5.68 14 22 H 0.29 11.91 8.29 -92.71 -0.77 11.14 14 23 H 0.11 3.79 6.56 -2.39 -0.02 3.77 14 Total: -1.00 -50.02 243.81 7.06 -42.96 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.30 Total: 1.41 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 3.25 Total: 9.64 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.88 Total: -71.96 kcal Atomic # 9 Polarization: -16.57 SS G_CDS: 1.44 Total: -15.13 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -50.02 7.06 -42.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556378.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.464 kcal (2) G-P(sol) polarization free energy of solvation -50.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds