Wall clock time and date at job start Mon Mar 30 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86796 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47380 * 239.99861 * 3 2 1 5 5 H 1.48496 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46831 * 120.00137 * 3 2 1 7 7 C 1.39943 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99691 * 162.79448 * 7 2 1 9 9 C 1.41290 * 120.00134 * 343.07202 * 7 2 1 10 10 C 1.40720 * 120.26461 * 334.53142 * 9 7 2 11 11 C 1.36550 * 119.89721 * 179.69055 * 10 9 7 12 12 C 1.38715 * 120.44716 * 0.59156 * 11 10 9 13 13 C 1.38485 * 120.54662 * 359.71025 * 12 11 10 14 14 C 1.50697 * 119.96121 * 179.97438 * 13 12 11 15 15 Br 1.96598 * 109.47487 * 269.97940 * 14 13 12 16 16 C 1.38026 * 120.08838 * 359.97438 * 13 12 11 17 17 F 1.35100 * 120.22807 * 179.97438 * 16 13 12 18 18 H 0.96992 * 119.99639 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.05164 * 359.97438 * 10 9 7 20 20 H 1.08000 * 119.77554 * 180.29555 * 11 10 9 21 21 H 1.08003 * 119.73225 * 179.68710 * 12 11 10 22 22 H 1.09003 * 109.46863 * 29.97943 * 14 13 12 23 23 H 1.09001 * 109.47502 * 149.97142 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0963 1.6962 1.2126 7 6 2.0081 -1.2120 -0.0005 8 1 3.0519 -1.2328 -0.2772 9 6 1.3476 -2.4092 0.3552 10 6 0.2181 -2.3738 1.1938 11 6 -0.4184 -3.5349 1.5277 12 6 0.0480 -4.7530 1.0556 13 6 1.1616 -4.8099 0.2343 14 6 1.6572 -6.1404 -0.2706 15 35 2.9641 -6.8779 0.9996 16 6 1.8182 -3.6494 -0.1225 17 9 2.9051 -3.7017 -0.9232 18 1 -0.4849 0.8400 0.0004 19 1 -0.1476 -1.4294 1.5690 20 1 -1.2879 -3.5050 2.1676 21 1 -0.4613 -5.6647 1.3311 22 1 0.8170 -6.8280 -0.3676 23 1 2.1312 -6.0065 -1.2429 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238556483.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:58 Heat of formation + Delta-G solvation = -55.844269 kcal Electronic energy + Delta-G solvation = -11802.186985 eV Core-core repulsion = 9381.579606 eV Total energy + Delta-G solvation = -2420.607379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.22871 -39.37045 -35.96035 -33.61119 -31.53269 -30.56955 -27.36329 -26.62335 -22.81684 -22.08245 -19.02886 -17.94138 -17.32883 -16.52074 -16.12884 -15.81937 -14.69273 -14.48217 -14.27725 -14.01251 -13.76182 -13.43538 -12.96472 -12.77739 -12.39626 -12.13492 -11.79736 -11.53741 -11.10482 -10.75011 -10.72859 -9.42048 -9.20215 -8.71971 -6.43636 0.32630 0.82048 1.29550 1.36717 1.47519 1.52974 2.17798 2.64813 3.52752 3.74904 3.88268 4.10166 4.49623 4.55454 4.77297 4.96724 5.15725 5.28175 5.55916 5.70138 6.00616 6.02086 6.13990 6.54309 6.75516 6.86489 8.23862 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.043038 B = 0.006846 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.434803 B = 4089.263530 C = 4488.895756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.069 0.931 9 C 0.055 3.945 10 C -0.159 4.159 11 C -0.109 4.109 12 C -0.191 4.191 13 C -0.101 4.101 14 C -0.015 4.015 15 Br -0.171 7.171 16 C -0.042 4.042 17 F -0.166 7.166 18 H 0.293 0.707 19 H 0.112 0.888 20 H 0.127 0.873 21 H 0.136 0.864 22 H 0.133 0.867 23 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -8.137 1.481 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.052 3.948 10 C -0.179 4.179 11 C -0.127 4.127 12 C -0.211 4.211 13 C -0.102 4.102 14 C -0.129 4.129 15 Br -0.091 7.091 16 C -0.063 4.063 17 F -0.145 7.145 18 H 0.104 0.896 19 H 0.130 0.870 20 H 0.145 0.855 21 H 0.154 0.846 22 H 0.152 0.848 23 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.018 -8.266 1.847 8.530 hybrid contribution 0.292 1.001 -0.550 1.179 sum 1.310 -7.265 1.297 7.495 Atomic orbital electron populations 1.69815 1.08721 1.31116 1.34423 1.26684 0.95593 1.04274 0.91031 0.85247 0.78913 0.75580 0.80016 1.18774 1.18371 1.18463 1.19644 0.97967 0.92486 1.42356 0.91312 1.17970 0.93715 0.91602 0.91541 1.20987 0.98402 0.98229 1.00257 1.20811 0.99560 0.92415 0.99943 1.20516 0.98767 0.97934 1.03930 1.19332 0.97739 0.91655 1.01501 1.23435 0.97599 0.95683 0.96223 1.97307 1.61680 1.85587 1.64493 1.17923 0.91042 0.95063 1.02296 1.91235 1.53509 1.97278 1.72465 0.89580 0.86973 0.85513 0.84570 0.84836 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.20 10.97 21.83 0.24 -40.96 14 2 C 0.04 2.02 5.15 85.25 0.44 2.45 14 3 Si 0.98 37.98 29.59 68.60 2.03 40.01 14 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 14 5 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 7 C -0.50 -27.19 8.78 23.43 0.21 -26.99 14 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 14 9 C 0.05 2.95 5.57 -21.25 -0.12 2.83 14 10 C -0.16 -7.95 8.64 22.48 0.19 -7.75 14 11 C -0.11 -4.60 9.97 21.99 0.22 -4.39 14 12 C -0.19 -7.44 9.70 22.44 0.22 -7.23 14 13 C -0.10 -4.17 5.19 -19.86 -0.10 -4.27 14 14 C -0.02 -0.50 6.55 71.23 0.47 -0.03 14 15 Br -0.17 -5.48 33.92 -20.37 -0.69 -6.17 14 16 C -0.04 -2.10 7.25 22.89 0.17 -1.93 14 17 F -0.17 -8.33 15.94 44.97 0.72 -7.61 14 18 H 0.29 13.27 8.30 -92.71 -0.77 12.50 14 19 H 0.11 5.81 6.20 -2.91 -0.02 5.79 14 20 H 0.13 4.50 8.06 -2.91 -0.02 4.48 14 21 H 0.14 4.28 8.06 -2.91 -0.02 4.25 14 22 H 0.13 3.41 8.09 -2.39 -0.02 3.39 14 23 H 0.10 3.25 7.64 -2.39 -0.02 3.23 14 Total: -1.00 -56.93 232.62 5.21 -51.72 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.23 Total: 10.32 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 1.69 Total: -47.31 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.24 Total: -40.96 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.72 Total: -7.61 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 35 Polarization: -5.48 SS G_CDS: -0.69 Total: -6.17 kcal Total: -56.93 5.21 -51.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556483.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.123 kcal (2) G-P(sol) polarization free energy of solvation -56.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds