Wall clock time and date at job start Mon Mar 30 2020 06:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40291 * 120.37607 * 129.17856 * 3 2 1 5 5 N 1.31117 * 120.68028 * 180.02562 * 4 3 2 6 6 C 1.33844 * 121.57868 * 359.97438 * 5 4 3 7 7 C 1.41052 * 119.64952 * 179.71980 * 6 5 4 8 8 H 1.08003 * 120.00044 * 180.02562 * 7 6 5 9 9 C 1.40235 * 120.00008 * 0.02562 * 7 6 5 10 10 N 1.30628 * 119.99782 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47251 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46739 * 120.00316 * 11 9 7 14 14 H 1.48507 * 109.47253 * 239.99939 * 11 9 7 15 15 C 1.40739 * 120.70111 * 359.97438 * 6 5 4 16 16 C 1.50700 * 120.37379 * 179.97438 * 15 6 5 17 17 F 1.39906 * 109.47355 * 300.00124 * 16 15 6 18 18 F 1.39899 * 109.47079 * 59.99686 * 16 15 6 19 19 C 1.36932 * 119.25553 * 0.02743 * 15 6 5 20 20 Cl 1.73602 * 120.73110 * 179.97438 * 19 15 6 21 21 H 1.08003 * 119.66622 * 0.02562 * 4 3 2 22 22 H 0.97003 * 119.99110 * 179.97438 * 10 9 7 23 23 H 1.09001 * 109.47344 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2771 0.7656 -0.9382 5 7 4.5883 0.7702 -0.9439 6 6 5.2956 0.0525 -0.0629 7 6 6.7050 0.0828 -0.1097 8 1 7.2813 -0.4945 0.5982 9 6 7.3579 0.8624 -1.0753 10 7 6.6609 1.5609 -1.9311 11 14 9.2245 0.9030 -1.1367 12 1 9.7740 0.0322 -0.0668 13 1 9.6869 0.4125 -2.4600 14 1 9.6963 2.2963 -0.9327 15 6 4.6479 -0.7362 0.9062 16 6 5.4515 -1.5419 1.8942 17 9 6.2572 -2.4551 1.2056 18 9 6.2591 -0.6838 2.6483 19 6 3.2793 -0.7642 0.9406 20 17 2.4409 -1.7243 2.1192 21 1 2.7375 1.3568 -1.6633 22 1 7.1126 2.1005 -2.5988 23 1 4.7759 -2.0820 2.5575 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238559280.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:50 Heat of formation + Delta-G solvation = -57.108477 kcal Electronic energy + Delta-G solvation = -16520.418915 eV Core-core repulsion = 13223.016848 eV Total energy + Delta-G solvation = -3297.402067 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.19662 -46.14093 -38.93915 -36.29388 -35.68615 -34.14816 -31.86149 -30.84547 -27.30505 -25.16361 -22.65122 -21.76226 -18.26647 -18.00419 -17.18680 -16.42230 -15.80034 -15.39976 -14.91678 -14.79506 -13.63437 -13.19669 -13.04694 -12.79950 -12.54956 -12.49695 -12.20739 -12.00081 -11.79030 -11.78760 -11.39267 -11.31987 -11.27688 -10.94283 -10.55156 -9.98178 -9.78345 -8.72515 -8.26982 -8.21418 -7.06317 -5.24020 1.77298 2.09993 2.45594 2.81845 2.84129 2.91327 3.50204 3.57503 3.79055 4.34874 4.54137 4.84021 5.14724 5.18278 5.37746 5.68527 5.88647 5.95639 6.38207 6.52785 6.66425 6.71091 7.14604 7.63593 7.87559 8.17758 8.38563 9.40379 9.62558 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.008927 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.703978 B = 3135.940107 C = 4119.143707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.292 3.708 3 C -0.261 4.261 4 C 0.213 3.787 5 N -0.474 5.474 6 C 0.266 3.734 7 C -0.349 4.349 8 H 0.105 0.895 9 C 0.055 3.945 10 N -0.672 5.672 11 Si 0.920 3.080 12 H -0.251 1.251 13 H -0.265 1.265 14 H -0.265 1.265 15 C -0.320 4.320 16 C 0.332 3.668 17 F -0.203 7.203 18 F -0.203 7.203 19 C 0.123 3.877 20 Cl -0.087 7.087 21 H 0.144 0.856 22 H 0.287 0.713 23 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -2.151 2.638 4.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.019 4.019 3 C -0.272 4.272 4 C 0.035 3.965 5 N -0.184 5.184 6 C 0.146 3.854 7 C -0.376 4.376 8 H 0.123 0.877 9 C -0.177 4.177 10 N -0.289 5.289 11 Si 0.742 3.258 12 H -0.174 1.174 13 H -0.190 1.190 14 H -0.190 1.190 15 C -0.327 4.327 16 C 0.278 3.722 17 F -0.185 7.185 18 F -0.185 7.185 19 C 0.089 3.911 20 Cl -0.058 7.058 21 H 0.161 0.839 22 H 0.099 0.901 23 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.836 -1.616 1.981 3.148 hybrid contribution 0.659 -0.527 0.643 1.061 sum 2.496 -2.144 2.624 4.209 Atomic orbital electron populations 1.81082 1.12244 1.12254 1.10955 1.25468 0.92279 0.91963 0.92217 1.16204 0.84576 1.17166 1.09261 1.22845 0.91002 0.90774 0.91906 1.68867 1.04350 1.21619 1.23574 1.18247 0.93776 0.87077 0.86266 1.20381 0.90292 1.17353 1.09608 0.87695 1.26388 1.02512 0.94232 0.94536 1.70039 1.38454 1.12466 1.07910 0.86009 0.79812 0.79847 0.80132 1.17442 1.19017 1.19011 1.20329 0.91378 1.13303 1.07714 1.19923 0.83798 0.81601 0.86863 1.92954 1.76383 1.67552 1.81576 1.92953 1.76284 1.72306 1.76923 1.20300 0.90718 0.91159 0.88930 1.98323 1.78456 1.71006 1.57989 0.83916 0.90109 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.22 18.54 41.84 0.78 -9.44 14 2 C 0.29 5.92 14.50 -22.47 -0.33 5.59 14 3 C -0.26 -5.32 5.78 -106.33 -0.61 -5.94 14 4 C 0.21 4.41 10.93 -17.09 -0.19 4.22 14 5 N -0.47 -11.08 7.83 -10.81 -0.08 -11.17 14 6 C 0.27 6.25 6.54 -84.98 -0.56 5.70 14 7 C -0.35 -8.04 8.17 -37.77 -0.31 -8.35 14 8 H 0.11 2.36 5.46 -52.48 -0.29 2.07 14 9 C 0.05 1.18 5.50 -17.31 -0.10 1.08 14 10 N -0.67 -14.93 11.44 55.56 0.64 -14.29 14 11 Si 0.92 15.96 29.56 -169.99 -5.03 10.93 14 12 H -0.25 -4.38 7.11 56.52 0.40 -3.98 14 13 H -0.27 -4.52 7.11 56.52 0.40 -4.11 14 14 H -0.27 -4.51 7.11 56.52 0.40 -4.11 14 15 C -0.32 -6.85 5.40 -104.15 -0.56 -7.42 14 16 C 0.33 6.40 4.83 36.01 0.17 6.57 14 17 F -0.20 -4.05 16.01 2.25 0.04 -4.02 14 18 F -0.20 -4.05 16.03 2.25 0.04 -4.02 14 19 C 0.12 2.49 6.35 -39.18 -0.25 2.24 14 20 Cl -0.09 -1.52 26.26 -51.86 -1.36 -2.89 14 21 H 0.14 2.56 8.06 -52.48 -0.42 2.13 14 22 H 0.29 5.63 8.29 -40.82 -0.34 5.30 14 23 H 0.10 1.68 6.24 -51.93 -0.32 1.35 14 LS Contribution 243.04 15.07 3.66 3.66 Total: -1.00 -24.68 243.04 -4.22 -28.89 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -0.17 Total: -1.36 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.72 Total: 3.69 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 1.33 Total: -34.90 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.07 Total: -8.03 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.36 Total: -2.89 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -24.68 -4.22 -28.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559280.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.216 kcal (2) G-P(sol) polarization free energy of solvation -24.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds