Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.33213 * 119.46825 * 255.70336 * 3 2 1 5 5 C 1.31078 * 121.74045 * 180.02562 * 4 3 2 6 6 C 1.41151 * 120.45626 * 359.97438 * 5 4 3 7 7 C 1.40980 * 120.54082 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99968 * 154.75407 * 7 6 5 9 9 C 1.40220 * 119.99861 * 334.74647 * 7 6 5 10 10 N 1.30659 * 119.99798 * 343.22466 * 9 7 6 11 11 Si 1.86798 * 119.99843 * 163.21568 * 9 7 6 12 12 H 1.48502 * 109.47086 * 60.00570 * 11 9 7 13 13 H 1.48498 * 109.47163 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47346 * 300.00695 * 11 9 7 15 15 C 1.41193 * 118.92055 * 359.97438 * 6 5 4 16 16 C 1.50695 * 120.79909 * 180.02562 * 15 6 5 17 17 F 1.39901 * 109.47561 * 300.00220 * 16 15 6 18 18 F 1.39905 * 109.47045 * 60.00438 * 16 15 6 19 19 C 1.36856 * 118.39806 * 359.72916 * 15 6 5 20 20 Cl 1.73603 * 120.29008 * 180.28670 * 19 15 6 21 21 H 1.08004 * 119.77262 * 180.02562 * 5 4 3 22 22 H 0.97013 * 119.99515 * 179.97438 * 10 9 7 23 23 H 1.08999 * 109.47559 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2232 0.2873 1.1239 5 6 4.5330 0.3012 1.1741 6 6 5.2962 0.0084 0.0235 7 6 6.7050 0.0223 0.0756 8 1 7.2772 -0.5677 -0.6251 9 6 7.3633 0.8022 1.0371 10 7 6.7187 1.7530 1.6598 11 14 9.1616 0.4817 1.4279 12 1 9.9754 0.6648 0.1992 13 1 9.6188 1.4343 2.4713 14 1 9.3202 -0.9089 1.9240 15 6 4.6259 -0.2998 -1.1804 16 6 5.3988 -0.6195 -2.4339 17 9 6.2033 0.4723 -2.7771 18 9 6.2050 -1.7411 -2.2114 19 6 3.2573 -0.3072 -1.1798 20 17 2.3832 -0.6868 -2.6308 21 1 5.0316 0.5376 2.1025 22 1 7.1741 2.2923 2.3253 23 1 4.7030 -0.8274 -3.2468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238559404.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -75.465184 kcal Electronic energy + Delta-G solvation = -16514.627910 eV Core-core repulsion = 13216.429836 eV Total energy + Delta-G solvation = -3298.198074 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.75512 -47.72447 -40.74932 -37.82347 -37.41525 -36.17310 -33.99206 -32.05300 -28.97336 -26.96975 -24.42398 -23.47694 -19.98503 -19.85113 -18.77718 -18.00330 -17.44545 -16.85892 -16.66328 -16.36917 -15.52995 -15.09260 -14.67775 -14.48180 -14.13499 -13.88426 -13.79131 -13.76430 -13.58051 -13.17467 -13.09974 -12.98250 -12.75831 -12.41077 -12.00619 -11.86154 -11.39176 -10.59835 -10.27067 -9.74630 -9.11566 -6.85984 -0.01608 0.39420 0.89359 1.39796 1.45840 1.57635 1.70242 1.95668 2.12928 2.60260 2.84394 3.11079 3.28824 3.48087 3.80004 4.29176 4.31955 4.36050 4.75991 4.82693 4.95759 5.15159 5.59364 5.99934 6.21325 6.31671 6.57115 7.28165 7.84060 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.008878 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.741228 B = 3153.020628 C = 4079.463096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.308 3.692 3 C -0.025 4.025 4 N -0.433 5.433 5 C 0.065 3.935 6 C 0.074 3.926 7 C -0.383 4.383 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.758 5.758 11 Si 0.993 3.007 12 H -0.256 1.256 13 H -0.257 1.257 14 H -0.251 1.251 15 C -0.283 4.283 16 C 0.335 3.665 17 F -0.206 7.206 18 F -0.206 7.206 19 C 0.062 3.938 20 Cl -0.059 7.059 21 H 0.167 0.833 22 H 0.314 0.686 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -2.212 -3.381 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.005 4.005 3 C -0.154 4.154 4 N -0.142 5.142 5 C -0.111 4.111 6 C 0.066 3.934 7 C -0.409 4.409 8 H 0.124 0.876 9 C -0.188 4.188 10 N -0.379 5.379 11 Si 0.811 3.189 12 H -0.180 1.180 13 H -0.181 1.181 14 H -0.175 1.175 15 C -0.290 4.290 16 C 0.282 3.718 17 F -0.187 7.187 18 F -0.187 7.187 19 C 0.030 3.970 20 Cl -0.030 7.030 21 H 0.184 0.816 22 H 0.127 0.873 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.731 -1.858 -2.687 4.959 hybrid contribution 1.358 -0.062 -0.558 1.470 sum 5.089 -1.920 -3.246 6.334 Atomic orbital electron populations 1.81046 1.11966 1.13460 1.08903 1.25051 0.91698 0.91642 0.92115 1.15375 0.85307 1.23692 0.91013 1.67134 1.11870 1.09658 1.25512 1.23142 0.86614 1.02473 0.98913 1.18579 0.95294 0.89289 0.90209 1.20453 0.91067 1.17942 1.11487 0.87608 1.27144 1.06838 0.92101 0.92721 1.69638 1.41848 1.10513 1.15902 0.85020 0.73772 0.80415 0.79672 1.18023 1.18073 1.17457 1.19993 0.91355 1.20758 0.96885 1.20092 0.84050 0.72501 0.95197 1.92955 1.76630 1.56089 1.93040 1.92931 1.76553 1.53051 1.96199 1.20956 0.91404 0.97695 0.86962 1.98318 1.76006 1.92433 1.36225 0.81588 0.87307 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.77 18.54 19.00 0.35 -20.42 14 2 C 0.31 13.44 14.55 88.33 1.29 14.72 14 3 C -0.03 -1.13 6.60 40.62 0.27 -0.87 14 4 N -0.43 -20.16 10.26 -186.62 -1.91 -22.08 14 5 C 0.06 2.95 9.88 85.52 0.84 3.80 14 6 C 0.07 3.29 5.57 -21.17 -0.12 3.17 14 7 C -0.38 -16.19 7.92 23.42 0.19 -16.00 14 8 H 0.11 4.38 6.19 -2.91 -0.02 4.36 14 9 C 0.04 1.42 5.17 85.35 0.44 1.86 14 10 N -0.76 -30.20 10.95 21.87 0.24 -29.96 14 11 Si 0.99 28.74 29.59 68.60 2.03 30.77 14 12 H -0.26 -7.46 7.11 99.48 0.71 -6.76 14 13 H -0.26 -6.90 7.11 99.48 0.71 -6.19 14 14 H -0.25 -7.15 7.11 99.48 0.71 -6.45 14 15 C -0.28 -11.85 5.41 -19.46 -0.11 -11.96 14 16 C 0.33 12.28 4.87 71.23 0.35 12.62 14 17 F -0.21 -8.00 16.61 44.97 0.75 -7.25 14 18 F -0.21 -7.63 15.81 44.97 0.71 -6.92 14 19 C 0.06 2.53 6.31 22.39 0.14 2.67 14 20 Cl -0.06 -2.00 26.13 -2.72 -0.07 -2.07 14 21 H 0.17 7.39 6.19 -2.91 -0.02 7.37 14 22 H 0.31 10.88 8.29 -92.70 -0.77 10.12 14 23 H 0.13 4.03 6.26 -2.39 -0.01 4.01 14 Total: -1.00 -48.14 242.44 6.69 -41.45 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.30 Total: 6.47 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 3.29 Total: 10.02 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.32 Total: -72.46 kcal Atomic # 9 Polarization: -15.64 SS G_CDS: 1.46 Total: -14.18 kcal Atomic # 14 Polarization: 28.74 SS G_CDS: 2.03 Total: 30.77 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.07 kcal Total: -48.14 6.69 -41.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559404.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.014 kcal (2) G-P(sol) polarization free energy of solvation -48.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds