Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.33229 * 119.44613 * 270.22786 * 3 2 1 5 5 C 1.31093 * 121.77432 * 179.97438 * 4 3 2 6 6 C 1.41116 * 120.42517 * 359.97438 * 5 4 3 7 7 C 1.40924 * 120.55529 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99363 * 155.43745 * 7 6 5 9 9 C 1.40220 * 120.00044 * 335.43268 * 7 6 5 10 10 N 1.30668 * 120.00260 * 342.21382 * 9 7 6 11 11 Si 1.86803 * 119.99825 * 162.21094 * 9 7 6 12 12 H 1.48500 * 109.47184 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46771 * 119.99911 * 11 9 7 14 14 H 1.48501 * 109.47438 * 239.99817 * 11 9 7 15 15 C 1.41386 * 118.88354 * 0.02562 * 6 5 4 16 16 Cl 1.73599 * 120.81013 * 180.02562 * 15 6 5 17 17 C 1.36910 * 118.37417 * 359.72610 * 15 6 5 18 18 C 1.50696 * 120.28039 * 180.26366 * 17 15 6 19 19 F 1.39905 * 109.46859 * 300.25891 * 18 17 15 20 20 F 1.39898 * 109.47437 * 60.25688 * 18 17 15 21 21 H 1.07998 * 119.78608 * 179.97438 * 5 4 3 22 22 H 0.97001 * 120.00038 * 179.97438 * 10 9 7 23 23 H 1.08998 * 109.47168 * 180.26010 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2229 -0.0037 1.1602 5 6 4.5328 -0.0038 1.2134 6 6 5.2962 0.0002 0.0266 7 6 6.7044 -0.0005 0.0807 8 1 7.2765 -0.3866 -0.7501 9 6 7.3628 0.5001 1.2130 10 7 6.7241 1.2710 2.0527 11 14 9.1532 0.0650 1.5209 12 1 9.6434 -0.8153 0.4300 13 1 9.9655 1.3076 1.5563 14 1 9.2741 -0.6427 2.8208 15 6 4.6246 0.0048 -1.2175 16 17 5.5142 0.0091 -2.7082 17 6 3.2555 -0.0005 -1.2178 18 6 2.4959 -0.0018 -2.5193 19 9 2.8305 1.1397 -3.2557 20 9 2.8304 -1.1448 -3.2533 21 1 5.0307 -0.0070 2.1717 22 1 7.1795 1.6170 2.8362 23 1 1.4252 -0.0016 -2.3151 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238559959.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -71.880605 kcal Electronic energy + Delta-G solvation = -16415.105913 eV Core-core repulsion = 13117.063279 eV Total energy + Delta-G solvation = -3298.042635 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.01812 -48.00270 -40.75934 -37.68803 -37.18460 -36.22445 -33.59736 -32.69639 -28.45276 -27.36803 -24.54403 -23.20553 -20.18308 -19.77550 -18.90329 -18.27716 -17.77246 -17.13411 -16.62874 -15.84487 -15.44599 -14.95270 -14.89019 -14.45331 -14.38757 -14.07103 -14.00389 -13.80562 -13.57149 -13.42674 -13.16123 -12.81541 -12.70452 -12.42210 -12.01639 -11.45258 -11.33452 -10.38797 -10.34504 -9.88193 -9.09198 -6.76461 -0.10829 0.45123 1.31369 1.39411 1.45868 1.62753 1.65480 1.92376 2.13852 2.58240 2.63898 2.96000 3.09609 3.28348 3.52579 3.98926 4.29706 4.47547 4.77809 4.82063 4.88295 5.15529 5.59882 6.03533 6.21408 6.33535 6.47666 7.30210 7.86868 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.008474 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.903774 B = 3303.501992 C = 4195.224210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.303 3.697 3 C 0.007 3.993 4 N -0.442 5.442 5 C 0.067 3.933 6 C 0.049 3.951 7 C -0.383 4.383 8 H 0.110 0.890 9 C 0.037 3.963 10 N -0.761 5.761 11 Si 0.994 3.006 12 H -0.251 1.251 13 H -0.261 1.261 14 H -0.255 1.255 15 C -0.104 4.104 16 Cl -0.063 7.063 17 C -0.112 4.112 18 C 0.320 3.680 19 F -0.197 7.197 20 F -0.195 7.195 21 H 0.169 0.831 22 H 0.313 0.687 23 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -1.397 -2.421 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.010 4.010 3 C -0.124 4.124 4 N -0.150 5.150 5 C -0.107 4.107 6 C 0.042 3.958 7 C -0.410 4.410 8 H 0.128 0.872 9 C -0.187 4.187 10 N -0.382 5.382 11 Si 0.812 3.188 12 H -0.174 1.174 13 H -0.186 1.186 14 H -0.179 1.179 15 C -0.136 4.136 16 Cl -0.034 7.034 17 C -0.119 4.119 18 C 0.265 3.735 19 F -0.178 7.178 20 F -0.176 7.176 21 H 0.186 0.814 22 H 0.126 0.874 23 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.620 -1.233 -1.678 3.347 hybrid contribution 1.523 0.082 -0.718 1.685 sum 4.143 -1.150 -2.396 4.922 Atomic orbital electron populations 1.81128 1.11677 1.13738 1.08132 1.25084 0.91643 0.91730 0.92494 1.15136 0.85061 1.23664 0.88493 1.67048 1.11820 1.09210 1.26968 1.23070 0.86501 1.02632 0.98527 1.18750 0.95856 0.91156 0.90078 1.20425 0.90826 1.27258 1.02484 0.87241 1.27131 1.06645 0.91606 0.93365 1.69648 1.41722 1.17163 1.09687 0.84918 0.73829 0.79790 0.80221 1.17425 1.18557 1.17904 1.20495 0.90173 1.14972 0.88003 1.98267 1.76047 1.97179 1.31941 1.20321 0.93407 1.03914 0.94232 1.20284 0.99102 0.71592 0.82516 1.92995 1.94617 1.51239 1.78954 1.92991 1.94621 1.51017 1.79015 0.81444 0.87408 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.09 18.54 19.00 0.35 -18.74 14 2 C 0.30 12.45 13.70 88.33 1.21 13.66 14 3 C 0.01 0.32 6.60 40.57 0.27 0.59 14 4 N -0.44 -20.18 10.26 -186.81 -1.92 -22.10 14 5 C 0.07 2.99 9.89 85.51 0.85 3.84 14 6 C 0.05 2.17 5.59 -21.14 -0.12 2.05 14 7 C -0.38 -15.81 8.58 23.41 0.20 -15.61 14 8 H 0.11 4.33 7.19 -2.91 -0.02 4.31 14 9 C 0.04 1.39 5.15 85.35 0.44 1.83 14 10 N -0.76 -29.81 10.97 21.87 0.24 -29.57 14 11 Si 0.99 27.88 29.60 68.60 2.03 29.91 14 12 H -0.25 -7.03 7.11 99.48 0.71 -6.32 14 13 H -0.26 -7.15 7.11 99.48 0.71 -6.45 14 14 H -0.26 -6.85 7.11 99.48 0.71 -6.15 14 15 C -0.10 -4.52 6.30 22.73 0.14 -4.38 14 16 Cl -0.06 -2.47 25.51 -2.72 -0.07 -2.54 14 17 C -0.11 -4.69 5.38 -19.79 -0.11 -4.80 14 18 C 0.32 11.70 4.86 71.23 0.35 12.04 14 19 F -0.20 -7.34 16.44 44.97 0.74 -6.60 14 20 F -0.20 -7.14 16.48 44.97 0.74 -6.40 14 21 H 0.17 7.34 6.17 -2.91 -0.02 7.33 14 22 H 0.31 10.60 8.29 -92.71 -0.77 9.84 14 23 H 0.12 4.08 6.44 -2.39 -0.02 4.07 14 Total: -1.00 -46.83 243.25 6.64 -40.19 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.30 Total: 6.62 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 3.23 Total: 9.23 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.32 Total: -70.40 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 1.48 Total: -13.01 kcal Atomic # 14 Polarization: 27.88 SS G_CDS: 2.03 Total: 29.91 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.07 Total: -2.54 kcal Total: -46.83 6.64 -40.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559959.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.695 kcal (2) G-P(sol) polarization free energy of solvation -46.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds