Wall clock time and date at job start Mon Mar 30 2020 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40349 * 120.35693 * 321.19496 * 3 2 1 5 5 N 1.31094 * 120.70665 * 180.02562 * 4 3 2 6 6 C 1.33836 * 121.55559 * 0.02562 * 5 4 3 7 7 C 1.40943 * 119.67147 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99656 * 180.02562 * 7 6 5 9 9 C 1.40256 * 120.00295 * 359.97438 * 7 6 5 10 10 N 1.30624 * 119.99868 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00433 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47339 * 180.02562 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00642 * 11 9 7 14 14 H 1.48504 * 109.46636 * 60.00201 * 11 9 7 15 15 C 1.40971 * 120.65616 * 0.25546 * 6 5 4 16 16 Cl 1.73602 * 120.38146 * 179.72482 * 15 6 5 17 17 C 1.36932 * 119.23286 * 359.48389 * 15 6 5 18 18 C 1.50699 * 120.71891 * 180.22361 * 17 15 6 19 19 F 1.39896 * 109.47063 * 210.28618 * 18 17 15 20 20 F 1.39897 * 109.47118 * 330.28859 * 18 17 15 21 21 H 1.07996 * 119.64666 * 0.02562 * 4 3 2 22 22 H 0.96996 * 120.00302 * 179.97438 * 10 9 7 23 23 H 1.08998 * 109.47045 * 90.28808 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 -0.9428 0.7589 5 7 4.5886 -0.9481 0.7643 6 6 5.2956 -0.0618 0.0532 7 6 6.7040 -0.1033 0.0884 8 1 7.2796 0.6097 -0.4831 9 6 7.3579 -1.0698 0.8665 10 7 6.6616 -1.9318 1.5582 11 14 9.2244 -1.1253 0.9127 12 1 9.6650 -2.2304 1.8013 13 1 9.7469 -1.3549 -0.4582 14 1 9.7453 0.1651 1.4313 15 6 4.6456 0.9167 -0.7262 16 17 5.5696 2.0674 -1.6403 17 6 3.2769 0.9457 -0.7578 18 6 2.5476 1.9740 -1.5835 19 9 1.3221 2.2737 -0.9790 20 9 3.3213 3.1363 -1.6706 21 1 2.7381 -1.6722 1.3447 22 1 7.1137 -2.6005 2.0960 23 1 2.3722 1.5786 -2.5840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238560036.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:55 Heat of formation + Delta-G solvation = -55.489327 kcal Electronic energy + Delta-G solvation = -16460.813650 eV Core-core repulsion = 13163.481794 eV Total energy + Delta-G solvation = -3297.331856 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.01336 -48.02390 -40.53236 -37.41827 -37.04221 -35.83668 -33.65091 -32.15733 -28.60937 -27.35119 -24.24780 -23.19675 -19.80392 -19.75181 -18.50276 -18.48835 -17.75501 -16.88411 -16.55295 -15.65515 -15.30848 -15.08023 -14.88399 -14.54687 -14.25212 -14.13269 -13.92480 -13.59600 -13.30073 -13.02154 -12.93904 -12.81288 -12.47173 -12.24142 -11.99422 -11.31265 -11.27448 -10.34663 -9.89114 -9.66816 -8.61630 -6.83204 0.10468 0.54793 1.44890 1.47139 1.51198 1.58057 2.01264 2.16817 2.21833 2.69755 2.79120 3.15978 3.41520 3.54206 3.59906 3.95192 4.09106 4.47771 4.82660 4.93636 4.99349 5.17199 5.58866 6.00300 6.25563 6.53584 6.80769 7.77250 8.11172 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.008279 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.615635 B = 3381.155076 C = 4371.559087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.301 3.699 3 C -0.239 4.239 4 C 0.196 3.804 5 N -0.495 5.495 6 C 0.223 3.777 7 C -0.376 4.376 8 H 0.113 0.887 9 C 0.020 3.980 10 N -0.706 5.706 11 Si 0.988 3.012 12 H -0.264 1.264 13 H -0.253 1.253 14 H -0.256 1.256 15 C -0.158 4.158 16 Cl -0.065 7.065 17 C -0.050 4.050 18 C 0.308 3.692 19 F -0.206 7.206 20 F -0.192 7.192 21 H 0.161 0.839 22 H 0.296 0.704 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 1.764 -3.445 5.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.010 4.010 3 C -0.250 4.250 4 C 0.021 3.979 5 N -0.207 5.207 6 C 0.103 3.897 7 C -0.404 4.404 8 H 0.131 0.869 9 C -0.208 4.208 10 N -0.324 5.324 11 Si 0.807 3.193 12 H -0.188 1.188 13 H -0.177 1.177 14 H -0.180 1.180 15 C -0.190 4.190 16 Cl -0.037 7.037 17 C -0.059 4.059 18 C 0.255 3.745 19 F -0.187 7.187 20 F -0.173 7.173 21 H 0.178 0.822 22 H 0.108 0.892 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.540 1.133 -2.892 4.012 hybrid contribution 0.433 0.741 -0.331 0.919 sum 2.973 1.874 -3.223 4.768 Atomic orbital electron populations 1.81079 1.12599 1.11932 1.12258 1.25415 0.92157 0.91443 0.91980 1.15994 0.84289 1.08578 1.16130 1.23114 0.90713 0.92819 0.91227 1.68996 1.05378 1.23994 1.22377 1.18814 0.94915 0.87361 0.88645 1.20576 0.90457 1.10595 1.18778 0.86908 1.27180 1.06466 0.93741 0.93441 1.70054 1.40556 1.08516 1.13282 0.85115 0.74287 0.79734 0.80166 1.18758 1.17713 1.17968 1.21135 0.90356 1.00176 1.07344 1.98255 1.74235 1.58598 1.72574 1.19956 0.92611 0.95941 0.97343 1.20550 0.74799 0.81080 0.98083 1.92977 1.45482 1.93906 1.86378 1.93041 1.75216 1.51825 1.97252 0.82176 0.89239 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.77 18.44 19.00 0.35 -20.42 14 2 C 0.30 12.03 12.69 88.33 1.12 13.15 14 3 C -0.24 -9.61 5.76 -21.00 -0.12 -9.73 14 4 C 0.20 8.07 10.93 85.32 0.93 9.00 14 5 N -0.50 -23.03 7.83 -188.01 -1.47 -24.51 14 6 C 0.22 10.29 6.55 40.17 0.26 10.56 14 7 C -0.38 -16.60 8.82 23.42 0.21 -16.40 14 8 H 0.11 4.63 6.62 -2.91 -0.02 4.61 14 9 C 0.02 0.82 5.50 85.36 0.47 1.29 14 10 N -0.71 -30.87 11.44 21.88 0.25 -30.62 14 11 Si 0.99 30.59 29.56 68.60 2.03 32.61 14 12 H -0.26 -7.75 7.11 99.48 0.71 -7.05 14 13 H -0.25 -7.62 7.11 99.48 0.71 -6.91 14 14 H -0.26 -7.79 7.11 99.48 0.71 -7.09 14 15 C -0.16 -6.64 6.30 22.63 0.14 -6.50 14 16 Cl -0.07 -2.41 24.33 -2.72 -0.07 -2.47 14 17 C -0.05 -1.98 5.76 -19.66 -0.11 -2.09 14 18 C 0.31 10.53 5.32 71.24 0.38 10.91 14 19 F -0.21 -7.72 14.70 44.97 0.66 -7.06 14 20 F -0.19 -6.74 14.28 44.97 0.64 -6.10 14 21 H 0.16 5.72 8.06 -2.91 -0.02 5.70 14 22 H 0.30 11.47 8.29 -92.71 -0.77 10.71 14 23 H 0.15 4.11 8.14 -2.39 -0.02 4.09 14 Total: -1.00 -51.29 240.62 6.96 -44.32 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.29 Total: 4.06 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 3.28 Total: 10.18 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -0.87 Total: -75.55 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 1.30 Total: -13.16 kcal Atomic # 14 Polarization: 30.59 SS G_CDS: 2.03 Total: 32.61 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.07 Total: -2.47 kcal Total: -51.29 6.96 -44.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238560036.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.166 kcal (2) G-P(sol) polarization free energy of solvation -51.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds